Pairwise Alignments

Query, 489 a.a., Type I restriction enzyme EcoEI M protein from Pseudomonas putida KT2440

Subject, 574 a.a., type I restriction-modification system, M subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 99.8 bits (247), Expect = 2e-25
 Identities = 105/366 (28%), Positives = 160/366 (43%), Gaps = 44/366 (12%)

Query: 57  IPDSCRWRTWAADPEGMTGDALKDF---IDNNLFPQLQNLHEYSNTPSAFVVRSVFEDAY 113
           +P S RW             ALKD    I   L    + + EY+++    +V   F    
Sbjct: 84  VPKSARW------------SALKDLKHDIGATLNKATEAIEEYNSSLEGVLVTIDFN--I 129

Query: 114 NYMKSGQLLRQVINKIQEGVDFNRAQERHEF-GNLYEQLLRDLQNAGN--AGEFYTPRPV 170
               S + LR +++   +    N   ER +  G  YE L++   ++     GEFYTP  V
Sbjct: 130 KNKLSDKKLRDLLSHFSKYRLRNEDFERPDLLGTAYEYLIKMFADSAGKKGGEFYTPSEV 189

Query: 171 TEFMVRMVDPKLAEKVMDPACGTGGFLTCAIEHKRRRYVKTAEDERTLQASIFGVEKKPL 230
              +V ++ PK   ++ DP  G+GG L      + R Y+  A  E     S+FG E    
Sbjct: 190 VSLLVALLKPKAGMRIYDPTSGSGGMLV-----QTRNYL-AAHGENPGNLSLFGQEMNLN 243

Query: 231 PHLLATTNMILHGIEVPSQIRHDNTLSKPL-ISWGPSERVHCIVANPPFG----GMEE-- 283
              +   NM LHG+ + + IR  +TL +P     G       ++ANPPF     G +E  
Sbjct: 244 TWAICKMNMFLHGV-LSADIRKGDTLREPKHTEGGELMTFDRVIANPPFSLAKWGKDECD 302

Query: 284 -DGIETNFPAAFRTRETADL-FLVLIMQLLKDGGRAAVVLPDGFLFGEGIKSRIKEKLLT 341
            DG    FP     ++  DL F+  ++      G   VV+P G LF    +  I++ +L 
Sbjct: 303 NDGF-GRFPYGTPPKDAGDLAFVQHMIASTNAEGMVGVVMPHGVLFRGSSEKAIRQGILE 361

Query: 342 ECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPTK---QVWFY--EHQYPAGVKNYSKTR 396
           +  L  ++ LP+G+F   TGI   LL   K    +   +V F   E +Y  G KN +K R
Sbjct: 362 DDLLEAVIGLPSGLFYG-TGIPACLLIINKRKAAERKGKVLFINGELEYEEG-KNQNKLR 419

Query: 397 PMRIEE 402
           P  IE+
Sbjct: 420 PQDIEK 425