Pairwise Alignments

Query, 489 a.a., Type I restriction enzyme EcoEI M protein from Pseudomonas putida KT2440

Subject, 530 a.a., N-6 DNA methylase (RefSeq) from Shewanella sp. ANA-3

 Score =  164 bits (415), Expect = 7e-45
 Identities = 153/501 (30%), Positives = 237/501 (47%), Gaps = 61/501 (12%)

Query: 12  DIMRKDVGVDGDAQRIGQLVWLLFLKIFDDRELEWELMDDNYKSPIPDSCRWRTWAADPE 71
           DI+R D G++  +  + +LV LLF+K+  +   E EL+D   K  +P+  RW     D  
Sbjct: 15  DILRDD-GINY-SDYVTELVLLLFIKMVHENT-EAELLD---KHTLPEGYRW----TDLH 64

Query: 72  GMTG-DALKDF--------------IDNNLFPQLQNLHEYSNTPSAFVVRSVFEDAYNYM 116
             +G + L D+              +D N  P+     +  N P   ++ +++ DA   +
Sbjct: 65  TKSGINLLNDYKALLLALSTGKRVMLDPN-DPEKTIEVQVHNDP---LISAIYADAQTRL 120

Query: 117 KSGQLLRQVINKIQEGVDFNRAQERHEFGNLYEQLLRD--LQNAGNAGEFYTPRPVTEFM 174
           +  + L Q I K  + +D+  A+ R   G+LYE LL     +    AG+++TPR +   M
Sbjct: 121 REPRHLEQ-ITKTLDQIDWFSAK-RDGLGDLYEGLLEKNASETKSGAGQYFTPRVLINSM 178

Query: 175 VRMVDPKLAEKVMDPACGTGGFLTCAIEHKRRRYVKTAEDERTLQASIF-------GVEK 227
           VR + P+  E + DPA GT GFL  A E+ +    +   D+ +L+   F       GVE 
Sbjct: 179 VRCIKPQAGEYIQDPAAGTAGFLIAAHEYIK---AQPEYDDLSLKQIDFQRYHAYVGVEL 235

Query: 228 KPLPHLLATTNMILHGIEVPSQ--IRHDNTLSKPLISWGPSERVHCIVANPPFGGMEE-D 284
            P    LA  N +LHG+E      +   N L     S  P++    I+ANPPFG  +  +
Sbjct: 236 VPNTRRLALMNCLLHGMEGDDDGVVHLGNALGNVGQSLKPAD---VILANPPFGTSKGGE 292

Query: 285 GIETNFPAAFRTRETADLFLVLIMQLLKDGGRAAVVLPDGFLFGEGIKSRIKEKLLTECN 344
              T     F T      FL  I + LK GGRAAVVLPD  LF  G  + I+  L+ +CN
Sbjct: 293 ASITRDDLTFDTSNKQLAFLQHIYRNLKPGGRAAVVLPDNVLFEAGKGTDIRRDLMDKCN 352

Query: 345 LHTIVRLPNGVFNPYTGIKTNLLFFTKGTP---------TKQVWFYEHQYPAGVKNYSKT 395
           LHTI+RLP G+F    G+KTN+LFFTKG+          T+ VW Y+ +    + ++ K 
Sbjct: 353 LHTILRLPTGIFYA-QGVKTNVLFFTKGSAKDKHQQEQCTENVWVYDLR--TNMPSFGKR 409

Query: 396 RPMRIEEFAVEEAWWGSEADGFAARAENAFAWQVSVEELQARNWNLDCKNPHTGEQVSHD 455
            P      A  E  +G  A G + R E  +++     E+   + N    N     +    
Sbjct: 410 TPFSDNHLAPFEQVYGEHAGGLSPRTEGEYSFGAEQVEIADTDENQGVDNRLVHSRWRCF 469

Query: 456 PDELLRNYASVQDEISDLRDQ 476
             + +R++     +IS L+D+
Sbjct: 470 SRDWIRDHKGDSLDISWLKDK 490