Pairwise Alignments

Query, 489 a.a., Type I restriction enzyme EcoEI M protein from Pseudomonas putida KT2440

Subject, 513 a.a., N-6 DNA methylase (RefSeq) from Shewanella sp. ANA-3

 Score =  168 bits (425), Expect = 5e-46
 Identities = 131/502 (26%), Positives = 234/502 (46%), Gaps = 61/502 (12%)

Query: 19  GVDGDAQRIGQLVWLLFLKIFDDRELEWE----LMDDNYKSPIPDS---CRWRTWAADPE 71
           G+      I Q+ +L++ ++ D  E   E    L   ++K    D+    RW  +    +
Sbjct: 21  GIANPLTVIEQITFLMYARLLDLHEQRDEKRAKLRGIDFKRRFNDNQQHIRWHRFIHQDK 80

Query: 72  GMTGDALKDFIDNNLFPQLQNLHEYSNTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQE 131
               D +   + + +FP  +N     +    F+     +DA   ++   L+   +    E
Sbjct: 81  ----DTMLKLVRDEVFPHFKNASGEGSLFGEFM-----KDAQCMIQKPTLMESAV----E 127

Query: 132 GVDFNRAQERHEFGNLYEQLLRDLQNAGNAGEFYTPRPVTEFMVRMVDPKLAEKVMDPAC 191
            +D    ++    G+LYE LL  L  AG  G+F TPR +   MV M+DP + ++++DP+C
Sbjct: 128 MIDKLPLEDSDTKGDLYEYLLSKLTTAGINGQFRTPRHIIRAMVEMLDPTVEDRIVDPSC 187

Query: 192 GTGGFLTCAIEHKRRRYVK---------TAEDERTLQASIFG----VEKKPLPHL----- 233
           GT GFLT A E+   +Y             ++    Q  I+     VE +   +      
Sbjct: 188 GTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYVNTDMFHG 247

Query: 234 ---------LATTNMILHGIEVPSQIRHDNTLSKPLISWGPSERVHCI---VANPPF-GG 280
                    +A  N+++HG+  P  + + +TLS       P++        +ANPPF G 
Sbjct: 248 FDFDATMLRIAAMNLVMHGVTEPD-VHYQDTLSGSFTERFPNQSKDAYTLCIANPPFKGS 306

Query: 281 MEEDGIETNFPAAFRTRETADLFLVLIMQLLKDGGRAAVVLPDGFLFGEG-IKSRIKEKL 339
           ++E+ ++       +T++T  LF+  I++LLK+GG+ A+++PDG LFG      ++++ +
Sbjct: 307 LDEEDVDPAILRMVKTKKTELLFVAQILRLLKNGGKTAIIVPDGVLFGSSNAHQQLRQHI 366

Query: 340 LTECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPTKQVWFYEHQYPAGVKNYSKTRPMR 399
           +    L  +V LP+GVF PY G+ T +LF TKG+ T  VWFY+ Q   G+    K  P++
Sbjct: 367 IENNELQAVVSLPSGVFKPYAGVSTAILFITKGSRTDHVWFYDVQ-ADGMSLDDKRTPIK 425

Query: 400 IEEFAVEEAWWGSEADGFAARAEN---AFAWQVSVEELQARNWNLDC---KNPHTGEQVS 453
             +     A + +     A   +N     A+ VS  ++    ++L     K     EQ  
Sbjct: 426 DNDLPDLVAKFKARDKAIAETEQNDRSQKAFWVSKADIVGNKYDLSINRYKQVVYAEQQY 485

Query: 454 HDPDELLRNYASVQDEI-SDLR 474
            DP  +L    +++++I +DL+
Sbjct: 486 DDPKVILSKLVALENDILADLK 507