Pairwise Alignments

Query, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

Subject, 579 a.a., type III restriction enzyme, res subunit (RefSeq) from Shewanella loihica PV-4

 Score = 77.4 bits (189), Expect = 2e-18
 Identities = 100/392 (25%), Positives = 168/392 (42%), Gaps = 63/392 (16%)

Query: 167 RYYQMNAINRTVEAVARGQDRVLLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNI 226
           R YQ  A++  +    R  D  LLV+ TG GK+     +I  L +  + + ++    + +
Sbjct: 4   RDYQRQAVDAAINHFKRSDDSALLVLPTGAGKSI----VIAELARIAKGRTLVLTHVKEL 59

Query: 227 LVDQTKNNDFKPFGQAMTKIARRQIDTSYE-IYLSLYQAVTGAEEEMNVYKQFSRDFFDL 285
           +    +         ++     +Q  T  + +  S+  AV          KQF   +  L
Sbjct: 60  VAQNAEKVGLLTDEASIFSAGLKQKSTRNKTVVASIQSAVRNP-------KQFDEPY-SL 111

Query: 286 IVIDECHRGSAAEDSAWREILGYF----SNATHVGLTATPKETKE--VSSITYFG----- 334
           ++IDECHR S  ++S ++++L +     S    +GLTATP       +    Y G     
Sbjct: 112 VIIDECHRVSNEKESQYQQLLSHLRTKNSKLRLLGLTATPYRLGSGWIYRYHYHGKIGNT 171

Query: 335 -EPVYSYTL-----KQGIEDGFLAPYKVVR-IDFDKDLQGWRPPKGMLDKNGELIEDRIY 387
            +PV+ + +     +  I+ GFL P KV+  +    D     P     + NGE      Y
Sbjct: 172 EQPVFEHCIFELPMRPLIKQGFLTPPKVLDGLSAQYDFSELSP-----NANGE------Y 220

Query: 388 NLKDMDRTLVIETR-TQLVAQKVTEFLKASDPFQKTIVFCDDINHAERMRQALVNLNPER 446
           N  ++D  L    R T+ + +++ +          TI+F   + HA+ +   L +  PE 
Sbjct: 221 NEAEVDSLLHHAGRATKAIVEQIKQLTNTR---AGTIIFAATVRHAKEIMTLLDS--PEA 275

Query: 447 VAENRKYVMRITGD--DQEGKAELDNFINPEERYPVIATTSKLMTTGVDAQTCKLIVLDQ 504
                     IT D   QE  A +D F   E  Y V      ++TTG DA    LI + +
Sbjct: 276 GL--------ITADTPSQERDAIIDAFKRRELSYLVNVA---VLTTGFDAPHVDLIAILR 324

Query: 505 HIKSMTEFKQIIGRGTRINEDFGKYWFTIMDF 536
              S++ F+Q++GRG RI E  GK    ++D+
Sbjct: 325 PTASVSLFQQMVGRGLRICE--GKRDCLVIDY 354