Pairwise Alignments

Query, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

Subject, 901 a.a., Type I restriction enzyme EcoKI R protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  120 bits (302), Expect = 3e-31
 Identities = 152/596 (25%), Positives = 249/596 (41%), Gaps = 112/596 (18%)

Query: 23  AGWDMHKQVREEVSFTKGRIMVR-GKLHSRGEARRADFILYHQANLPIAVIEAKDNKHSV 81
           AGW +    RE+   T   + +R G L    EA   D+ L+      + V+EAK  +  V
Sbjct: 18  AGWKVVN--REDYEPTGTAVAIREGLLKGNLEA---DYFLFINGKA-VGVLEAKREETDV 71

Query: 82  GSGM--QQALGYAEALD---------VPFVFSSNGDGFLFHDRSGTDSKVETELSLDQFP 130
            +    +QA  YA ++          +PF+F+SNG    F D    DS  +  +++   P
Sbjct: 72  FASKVCEQAALYARSVPNIYQAYQKPLPFIFTSNGKELYFCDFREQDSCFKQIITI---P 128

Query: 131 SPAELWHRYC---QWKGLDNAVQHKIEAPYYDDGSGRMPRYYQMNAINRTVEAVARGQDR 187
           +P EL  +      + GL    +  +             R  Q  A+    ++   GQ+R
Sbjct: 129 TPHELVKKLGIEDTFAGLPTLKRKGL-------------RDCQYEAVTELEKSFRAGQNR 175

Query: 188 VLLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNILVDQ----------TKNNDFK 237
            L+V+ATG GKTYTA    +R+      +R+LFL DRN L  Q          T+N D  
Sbjct: 176 ALMVLATGAGKTYTACLAAYRMLSYTPMRRVLFLVDRNNLGKQAEGEFGTFRLTENGDAF 235

Query: 238 PFGQAMTKIARRQIDTSYEIYLSLYQAVTG------------------AEE-EMNVYKQF 278
                + ++    I +   + +S  Q +                    AEE  +      
Sbjct: 236 NTIFTVNRLRSPSIPSDSNVVISTIQRLFSFLKGEAIEDNDDDDENEPAEEVTLPPNPNL 295

Query: 279 SRDFFDLIVIDECHRGSAAEDSAWREILGYFSNATHVGLTATPKETKEVSSITYF-GEPV 337
             D+FD+I+IDECHR        WR +L YF  A  VGLTATP       ++ +F    +
Sbjct: 296 PHDYFDMIIIDECHRSIYGN---WRMVLEYFDTARLVGLTATPIP----ETMAFFNNNRI 348

Query: 338 YSYTLKQGIEDGFLAPYKVVRIDFDKDLQGWRPPKGMLDK-----NGEL-----IEDRIY 387
            +YTL++ I DG     +V RI       G    +G   K      GE+      E + Y
Sbjct: 349 VNYTLEKSIVDGVNVDCRVYRIKTQVTETGGAILEGEKFKEETRYTGEVKTVSSKETKNY 408

Query: 388 NLKDMDRTLVIETRTQLVAQKVTEFLKAS-----------DPFQKTIVFCDDINHAERMR 436
             K+++R+++   + +L+     + +              D   KT++F  +  HA    
Sbjct: 409 TNKELNRSVINPAQIKLILSTYRDVVYTELFNDPQRKPNMDYLPKTLIFALNEAHATN-- 466

Query: 437 QALVNLNPERVAEN-RKYVMRITGDDQEGKAELDNFINPEERYPVIATTSKLMTTGVDAQ 495
             +V +  E    N  ++V +IT    +    +  F N ++    IA T  L+ TG D +
Sbjct: 467 --IVQIAKEVFGRNDDRFVQKITYSAGDSNELIRQFRNDKDFR--IAVTCTLVATGTDVK 522

Query: 496 TCKLIVLDQHIKSMTEFKQIIGRGTR-INED---------FGKYWFTIMDFKKATE 541
             ++++  + ++S+  + Q+ GRG R I +D         F K  F ++D    TE
Sbjct: 523 PLEVVMFMRDVESLPLYIQMKGRGVRTIGDDQLRNVTPNAFSKDCFYLVDAVGVTE 578