Pairwise Alignments

Query, 207 a.a., Ribosomal RNA large subunit methyltransferase E from Pseudomonas putida KT2440

Subject, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

 Score =  149 bits (377), Expect = 3e-41
 Identities = 77/204 (37%), Positives = 125/204 (61%), Gaps = 3/204 (1%)

Query: 6   KSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQ 65
           K    W+ +  ND +   A++  YRSRA+YKL ++ EK  LI+    V+DLG APGGW Q
Sbjct: 3   KKDKRWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQ 62

Query: 66  VTSRLIGGQGRLIASDILEMDSIA--DVTFIQGDFTHDEVLQRILEAVGDSHVDLVISDM 123
               ++G  G ++  D+  +  +   ++  I+GD T +E+L++  + + +   D++I D 
Sbjct: 63  AARDIVGEDGFIVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLPEKP-DVIICDA 121

Query: 124 APNMSGTPAVDIPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLKDVRSKFDKV 183
           +PN+SG   VD  R++ L  +AL  AT++LK GG+F++K+FQG+ F+ Y++ V   FDK 
Sbjct: 122 SPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKA 181

Query: 184 QMRKPSSSRDRSREQYLLGRGFKG 207
              KP +SRD S E Y++G+ F G
Sbjct: 182 FTTKPRASRDESAEVYVIGKRFNG 205