Pairwise Alignments

Query, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

Subject, 441 a.a., transcription elongation factor NusA from Synechococcus elongatus PCC 7942

 Score =  211 bits (536), Expect = 5e-59
 Identities = 128/407 (31%), Positives = 225/407 (55%), Gaps = 35/407 (8%)

Query: 8   VVESVSNEKGVPPGVIFEALEVALATATKK---------RFEDEV--DLRVEINRHTGSY 56
           ++ ++S +K +P  VI EAL+ AL    ++         +FE++   ++ VE++     +
Sbjct: 12  LIYAISEQKKLPANVIEEALKEALLKGYERYRRTQQMGEQFEEDYFDNIDVELDVEQEGF 71

Query: 57  ETFRRWTVVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKI--ESIEFGRIAAQTAKQ 114
                 T+V++ +  D  I   L  +++  P+A+ G+++   +  +  +FGR+AA   KQ
Sbjct: 72  RVLATKTIVNQVENPDHQIA--LADVQEVAPDAQAGEIVVLDVTPDKDDFGRMAAIQTKQ 129

Query: 115 VIVQKVREAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNN-----AEALLAREDI 169
           V+ QK+R+ +R  + + +++    ++   V +  R +VI+ + +       EA L R + 
Sbjct: 130 VLSQKLRDHQRKLIQEEFQDLEDPVLMAKVLRFERQSVILGVSSGLGRPEVEAELPRREQ 189

Query: 170 IPRETFRVGVRLRALLKEI-RTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAA 228
           +P + +R     R  LKE+     RGPQLI+SR    +++ LF  EVPEI +G++ ++A 
Sbjct: 190 LPNDNYRANATFRVFLKEVSEVPRRGPQLIVSRANAGLVVYLFENEVPEIQDGVVRIVAV 249

Query: 229 SRDP-------GSRAKIAVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDN 281
           +R+        G R KIAV + ++ +DP GACIG RGSR+Q V  EL GE++D++ W  +
Sbjct: 250 AREANPPTRHVGPRTKIAVDTLEREVDPVGACIGARGSRIQVVVNELRGEKIDVIRWSPD 309

Query: 282 PAQFVINAMSPAEVAAI-IVDEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNV 340
           PA ++ NA+SPA V  + +VD +     + V +D L+ AIG+ GQNVRLA++LTGW +++
Sbjct: 310 PATYIANALSPARVQEVRLVDPEGRIAHVLVNDDQLSLAIGKEGQNVRLAARLTGWKIDI 369

Query: 341 MTEKDIQAKQQAETGDILRNFIEELEVDEELAQVLVDEGFTSLEEIA 387
              KD+        G  +   I+E    +E A +  +E   +  E A
Sbjct: 370 ---KDVALYDAVTEGQRISELIQE---RQERAAIAAEEEARAAAEAA 410