Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

 Score =  286 bits (733), Expect = 3e-82
 Identities = 149/305 (48%), Positives = 205/305 (67%), Gaps = 7/305 (2%)

Query: 5   KRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATK 64
           +R  R + G+ILLDKP G +SN ALQKV+ L  AEKAGHTG+LDPLATG+LP+C GEATK
Sbjct: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63

Query: 65  FSQYLLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPP 124
           FSQ+LLDSDK Y  + ++G+ T+T D++G+V+QTR V V    + A + +FRG   Q+P 
Sbjct: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123

Query: 125 MYSALKRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRTLV 184
           M+SALK  G+PLY+ AR G  V REAR +T+  +EL   EG    + V CSKGTYIRT+V
Sbjct: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183

Query: 185 EDIGEALGCGAYVAELRRTQAGPFALAQTVTLEEL----EQAHAE--GGNEALDRFLMPS 238
           +D+GE LGCGA+V  LRR     +   + VTLE+L    EQAH +     + LD  L+P 
Sbjct: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243

Query: 239 DSGLQDWPLVSLSEHSAFYWLHGQAVRAPDAPQFGMVRVQDHNAR-FIGIGEVSEDGRIA 297
           D+ ++  P V++         HGQAV+   AP  GMVR+     + F+G+GE+ ++G++A
Sbjct: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303

Query: 298 PRRLI 302
           P+RL+
Sbjct: 304 PKRLV 308