Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 294 a.a., tRNA pseudouridine synthase B from Synechococcus elongatus PCC 7942

 Score =  179 bits (455), Expect = 5e-50
 Identities = 119/286 (41%), Positives = 158/286 (55%), Gaps = 16/286 (5%)

Query: 13  GIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDS 72
           G + LDKP G+TS+  + K+R LL   + GH G+LDP  TGVLP+  G AT+   Y L S
Sbjct: 5   GFVNLDKPAGWTSHDCVAKLRRLLRERRIGHGGTLDPAVTGVLPIAVGRATRLLPY-LPS 63

Query: 73  DKGYETVMQMGQTTNTGDAEGEVLQTRDVT-VGRADIEAVLPRFRGPISQIPPMYSALKR 131
            K Y   ++ G  T+T D  G+ L   D + + R  IEA LP+F G I Q PP  SA++ 
Sbjct: 64  GKTYVGTIRFGLQTSTDDLTGDRLAEADTSHLSREAIEAALPQFLGHIQQQPPQVSAVQV 123

Query: 132 DGQPLYKLARAGEV-VEREARSVTINRLELLEC-EGTRARLSV--GCSKGTYIRTLVEDI 187
            GQ LY+LAR GE   E   R+V I  + +L+   G++A LSV   C  GTYIR+L  D+
Sbjct: 124 QGQRLYQLARRGEAPTELPWRTVEIQSIRILQWRSGSQAELSVEIHCGAGTYIRSLARDL 183

Query: 188 GEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDSGLQDWPL 247
           G  LG G  +AELRRT +  F L Q+  L EL    A          L+  D  LQ    
Sbjct: 184 GAVLGVGGTLAELRRTASSGFDLNQSTPLTELLDGAAVP--------LLALDLPLQHLAK 235

Query: 248 VSLSEHSAFYWLHGQAVRAPDA--PQFGMVRVQDHNARFIGIGEVS 291
           V LS  ++  W  GQA+  PD+  P    VRV D N +F+GIG ++
Sbjct: 236 VQLSAETSDRWRQGQAMPVPDSVLPDAAPVRVYDLNGQFLGIGAIA 281