Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 311 a.a., tRNA pseudouridine synthase B from Sinorhizobium meliloti 1021

 Score =  206 bits (524), Expect = 6e-58
 Identities = 118/305 (38%), Positives = 172/305 (56%), Gaps = 11/305 (3%)

Query: 9   RNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQY 68
           R +SG ++LDKPL F S  A+ K++WL  A+KAGH G+LDPLA+G+LP+  G+ATK   Y
Sbjct: 10  RPISGWLILDKPLDFGSTEAVSKIKWLFKAQKAGHAGTLDPLASGMLPIALGDATKTVPY 69

Query: 69  LLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPPMYSA 128
           ++D  K YE  +  G+  +T D EGE +++         I A+LP++ G I+Q+PP +SA
Sbjct: 70  VMDGRKIYEFTVAWGEERSTDDLEGEAVRSSAARPEEEAIRALLPKYTGVIAQVPPQFSA 129

Query: 129 LKRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRTLVEDIG 188
           +K  G+  Y LAR GE VE  AR V + RL L+      A   + C KGTY+R+L  D+G
Sbjct: 130 IKIGGERAYDLARDGETVEIPAREVEVFRLSLIGSAPNLAHFEIECGKGTYVRSLARDMG 189

Query: 189 EALGCGAYVAELRRTQAGPFA------LAQTVTLEELEQAHAEGGNEALDRFLMPSDSGL 242
             LGC  ++A LRRT   PF       LA  V LE +E   AE    ALD +L+ +   L
Sbjct: 190 RDLGCFGHIASLRRTFVAPFGEEDMVPLADLVALEAIED-DAE-RLAALDAYLIDTGEAL 247

Query: 243 QDWPLVSLSEHSAFYWLHGQAV--RAPDAPQFGMVRVQDHNARFIGIGEVSEDGRIAPRR 300
            D P +++++  A     G  +  R  DAP            + + IGE++E G   P+R
Sbjct: 248 SDLPHIAVNDDQAHRLRMGNPIILRGRDAPLPTPEAYATAQGKLVAIGEIAE-GEFRPKR 306

Query: 301 LIRSE 305
           +  ++
Sbjct: 307 VFATQ 311