Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 315 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  279 bits (714), Expect = 5e-80
 Identities = 143/301 (47%), Positives = 201/301 (66%), Gaps = 7/301 (2%)

Query: 9   RNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQY 68
           RN+ GI+LLDKP G +SN ALQ+V+ + NA KAGHTG+LDPLATG+LP+C GEATKFSQ+
Sbjct: 8   RNIDGIVLLDKPTGMSSNHALQRVKRIYNASKAGHTGALDPLATGMLPVCLGEATKFSQH 67

Query: 69  LLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRADIEAVLPRFRGPISQIPPMYSA 128
           LLD+DK Y    ++GQ T+T D++GEV+  R +   +  ++A L  FRG   Q+P M+SA
Sbjct: 68  LLDADKRYLVTAKLGQRTDTSDSDGEVVSERPLNFTQEALDAALDSFRGDTLQVPSMFSA 127

Query: 129 LKRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRTLVEDIG 188
           LK  GQPLYK AR G+ V REAR +T+  L  ++ EG    L + CSKGTYIRT+++D+G
Sbjct: 128 LKYQGQPLYKYAREGKEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIRTIIDDLG 187

Query: 189 EALGCGAYVAELRRTQAGPFALAQTVTLEE----LEQAHAEG--GNEALDRFLMPSDSGL 242
           E LGCGA+V  LRRT    +   + VT+E     LEQA  EG      LD  L+P D+ +
Sbjct: 188 EKLGCGAHVIMLRRTAVAGYPYERMVTIEALEALLEQAEKEGVEPKTLLDPLLLPMDTAV 247

Query: 243 QDWPLVSLSEHSAFYWLHGQAVRAPDAPQFGMVRVQDHNA-RFIGIGEVSEDGRIAPRRL 301
            ++P V++ +  A Y ++G  VR        ++R+    A RF+G+G +++DG +AP+RL
Sbjct: 248 ANFPEVNIPDAVAPYLMNGNPVRVAGVSSDSLLRITLGEARRFVGVGAINDDGLLAPKRL 307

Query: 302 I 302
           +
Sbjct: 308 V 308