Pairwise Alignments

Query, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas putida KT2440

Subject, 313 a.a., tRNA pseudouridine synthase B from Marinobacter adhaerens HP15

 Score =  270 bits (689), Expect = 4e-77
 Identities = 152/308 (49%), Positives = 195/308 (63%), Gaps = 10/308 (3%)

Query: 5   KRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATK 64
           +R  R+V+GI+++DKP G TSN  LQ+V+ L  A KAGHTG+LDPLATGVLPLCFGEATK
Sbjct: 4   RRKGRDVNGILVIDKPAGVTSNGILQQVKRLFGAAKAGHTGALDPLATGVLPLCFGEATK 63

Query: 65  FSQYLLDSDKGYETVMQMGQTTNTGDAEGEVLQTRDVTVGRAD--IEAVLPRFRGPISQI 122
           FSQ +LDSDK Y    ++G  T TGD+EG V+  + V  G     +E +L  FRG I Q+
Sbjct: 64  FSQMMLDSDKAYIATARLGVRTETGDSEGAVVAEKPVPAGLTAEVLEPLLDGFRGDIQQV 123

Query: 123 PPMYSALKRDGQPLYKLARAGEVVEREARSVTINRLELLECEGTRARLSVGCSKGTYIRT 182
           P MYSALK  G+PLY+ AR G  VER AR VTI  L LL+       ++V C+KGTYIR+
Sbjct: 124 PSMYSALKHKGRPLYEYAREGIEVERPARPVTIYELTLLDIRENELDIAVSCTKGTYIRS 183

Query: 183 LVEDIGEALGCGAYVAELRRTQAGPFALAQTVTLEELEQAHAEGGNEALDRFLMPSDSGL 242
           LVEDIGEALGCGA+V  LRRT A  F LA    + +LE     G  E+LD  L+  D+ L
Sbjct: 184 LVEDIGEALGCGAHVTALRRTMASGFTLADAHAVSDLEAMRERG--ESLDGLLVAPDAAL 241

Query: 243 QDWPLVSLSEHSAFYWLHGQAVRAPDAPQFGMVRV---QDHNARFIGIGEVSEDG---RI 296
             +P   L+  +    L+GQ VR P     G VR+   +  N  F+G+ E   +G    +
Sbjct: 242 SMFPEHRLAGQALVSILNGQPVRIPGQAYDGFVRLYANESANESFVGLAEAFPEGEQTNL 301

Query: 297 APRRLIRS 304
            PRRL++S
Sbjct: 302 VPRRLVKS 309