Pairwise Alignments

Query, 773 a.a., transglycosylase/transpeptidase from Pseudomonas putida KT2440

Subject, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

 Score =  588 bits (1517), Expect = e-172
 Identities = 317/748 (42%), Positives = 463/748 (61%), Gaps = 13/748 (1%)

Query: 2   TRTRNPRTPQKRPTGRSRAWLG------WALKLSLVGLVIVAGFAVYLDAVVQEKFSGKR 55
           +R R  R+ +   + + + WLG      W L L+L  +++  G  +YLD++++++F G+ 
Sbjct: 9   SRGRKARSGKSASSSKLQIWLGRIWSIGWKLALTLAAVLVFIG--IYLDSMIKQRFEGQL 66

Query: 56  WTIPAKVYARPLELFTGQKLSKNDFLTELDALGYRRESAANGPGAASVNGNTVDLNTRGF 115
           + +P  VYAR L L  G  LS  +   ELD L YR+ +    PG  + + + ++L  R F
Sbjct: 67  FDLPTVVYARILTLEPGNGLSLQELRNELDVLNYRKVAQPRFPGEYASSSSRIELIRRPF 126

Query: 116 QFYEGMEPAQFVRVRFSGDYVAGLSGANGKA-LDVVRLEPLMIGGIYPKNLEDRILIKID 174
           +F +G EP + V + F G  +  +     K  L  +RLEP ++G +   + E R+ ++ D
Sbjct: 127 EFADGPEPDRRVMLTFDGSGLNKIESLEQKRELGYLRLEPKLMGMLEKDSPEQRLFLRRD 186

Query: 175 QVPKYLLETLVATEDREFYSHFGVSPKSIVRAMWVNTSSGSMRQGGSTLTQQLVKNFYLS 234
           Q P+ L++ L+ TEDR+FY H GVSP +I RAM VN  +G   QGGSTLTQQL KN +LS
Sbjct: 187 QFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQGGSTLTQQLAKNIFLS 246

Query: 235 SERSLSRKLTEAMMAVLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQFFFSQPL 294
           S+R+L RKL EA MA++++  Y K  ILEAYLNEV++GQ G  A+HGFGLAS+ +F QPL
Sbjct: 247 SDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGFGLASRLYFGQPL 306

Query: 295 SELKLHQIALLVGMVKGPSYYNPRRHPERALARRNLVLDLVAEQGVASQAEVDAAKKMPL 354
            EL++ Q+ALLVGMVKGPSYYNP R+ ERA  RR+LVL L+ E  + +  E   A   PL
Sbjct: 307 QELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILTAPEYQQAVTRPL 366

Query: 355 GVTKRGSLADSSFPAFLDLVKRQLRQDYRDEDLTEEGLRIFTSFDPILQMKAETSMSETF 414
            V K   +A S  PA+   V  +L++   D+   + GLR+FTS DP+ Q K E ++ +  
Sbjct: 367 DVQKTAQIA-SRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSLDPVSQSKLEQAIHDQI 425

Query: 415 KRLAGRKGADDVEAAMVVTNPETGEVQALIGSRQAGFAGFNRAIDAVRPIGSLVKPSVYL 474
            +LA   G  D+EAA +  +  +GE++A++G ++ G+ GFNR ++A R IGSLVKP+VYL
Sbjct: 426 PQLAKTAG-KDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVYL 484

Query: 475 TALEQPSKYTLTSWVQDEPFSVKGADGQVWRPQNYDRRPHGTIYLYQGLANSYNLSTAKL 534
           TAL  P +Y L + ++D+P ++KG++G  W P+NYDR+  G + LY  LA S N+ T  L
Sbjct: 485 TALAHPDQYNLATTLEDKPLTLKGSEGSAWTPRNYDRQYRGEVPLYLALAQSLNVPTVAL 544

Query: 535 GLEVGVPNVIKTIGRLGVNVD-WPAFPAMLLGAGGMSPMQVATMYQTIANGGFNTPMRGI 593
           G+++G+  V  T+G+LGVN D     P+MLLG+  ++P QVA MYQT+ N G   P+  +
Sbjct: 545 GMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAPLSAL 604

Query: 594 RSVLTAEGEPLKRYPFQIQQTFDPGAIYLVQNAMQRVMREGTGRSVYNTLPRSLTLAGKT 653
           RSVL  EG  L     ++ Q  D  A +L   AM++ ++EGTGR + N    S  LAGKT
Sbjct: 605 RSVLDLEGNVLYESLPRVSQAVDQQAAWLTTYAMKQGVQEGTGRYL-NAQFSSAALAGKT 663

Query: 654 GTSNDSRDSWFSGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSFMKKADPLPLDMPQ 713
           GT+ND+RDSWF G     +  +W+GRDDN  T  TGA+GAL+V+  ++K   P  L +P 
Sbjct: 664 GTTNDNRDSWFVGVDGREVTTIWLGRDDNQPTKLTGASGALRVYAQYLKYRIPEKLQLPW 723

Query: 714 PDNVVQAWIDPYSGHGSDASCPGAVQMP 741
           P+ +        +  G    C  A ++P
Sbjct: 724 PEGITTFGFAKQTQGGLKLDCDNAFKLP 751