Pairwise Alignments

Query, 773 a.a., transglycosylase/transpeptidase from Pseudomonas putida KT2440

Subject, 807 a.a., penicillin-binding protein, 1A family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  160 bits (405), Expect = 3e-43
 Identities = 114/353 (32%), Positives = 177/353 (50%), Gaps = 14/353 (3%)

Query: 425 DVEAAMVVTNPETGEVQALIGSRQAGFAGFNRAIDAVRPIGSLVKPSVYLTALEQPSKYT 484
           DV+ A+V   P+TG+V AL+G      + FNRAI A R  GS  KP VY  A++    +T
Sbjct: 458 DVQGAVVTIEPDTGDVLALVGGYSFSDSQFNRAIQARRQPGSSFKPIVYSAAMDHG--FT 515

Query: 485 LTSWVQDEPFS-VKGADGQVWRPQNYDRRPHGTIYLYQGLANSYNLSTAKLGLEVGVPNV 543
             S V D PF  +     ++WRP+N++   +G   L   LA S NL T ++  ++G+P V
Sbjct: 516 AGSVVLDAPFVYLNEYTDKIWRPENFEGVFYGPTLLRTALAKSRNLCTIRVAQKIGIPAV 575

Query: 544 IKTIGRLGVNVDWPAFPAMLLGAGGMSPMQVATMYQTIANGGFNTPMRGIRSVLTAEGEP 603
           I+    LG+   +P   ++ LGA  +SP+ +A  Y   A  G     R I S+  A GE 
Sbjct: 576 IERATALGLEGPFPNELSVSLGAVAVSPINMAEAYTAFAAEGRVAKRRFIHSIGDAWGET 635

Query: 604 LKRYPFQIQQTFDPGAIYLVQNAMQRVMREGTGRSVYNTLPRSLTLAGKTGTSNDSRDSW 663
           L      +++   P   +++   M+ V+++GT       L +   LAGKTGT+ND RD+W
Sbjct: 636 LFESKPDVREVLSPQNAFIMATLMKEVVQDGTATKA-KVLGK--PLAGKTGTTNDERDAW 692

Query: 664 FSGFSQDLLAVVWMGRDD---NGKTPFTGATGALQVWTSFMKKADP-LPL-DMPQPDNVV 718
           F G++  L+  V++G D     GK   TG   AL ++  + K  +P  P  D P P  +V
Sbjct: 693 FIGYTPHLVTAVYVGFDQVAPMGKFE-TGGRAALPIFVDYRKVVEPKYPADDFPMPPGIV 751

Query: 719 QAWIDPYSGHGSDASCPGAVQMPYIRGSEP--PAGAACGGEQDPVESVMDWVK 769
              +D  +G  +      +  +P+  G++P   AG       D  +S  D +K
Sbjct: 752 MVRVDGKTGQIAGPGSETSYLLPFQLGTQPTSTAGDPVHRGDDDTKSAEDLLK 804



 Score =  143 bits (360), Expect = 4e-38
 Identities = 89/272 (32%), Positives = 142/272 (52%), Gaps = 19/272 (6%)

Query: 166 EDRILIKIDQVPKYLLETLVATEDREFYSHFGVSPKSIVRAMWVNTSSGSMRQGGSTLTQ 225
           E R L  +D++   + +  +A ED  FY H G+ P +I RA   N  +GS++QGGST+TQ
Sbjct: 65  EKRFLAPLDKMSPRVPQAFLAAEDDGFYRHEGIDPIAIFRAFLKNMQAGSIKQGGSTITQ 124

Query: 226 QLVKNFYLSSERSLSRKLTEAMMAVLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLA 285
           Q+VK   L+SE+S  RK+ EA++A  LE +  K EIL  YLN++++G       +G   A
Sbjct: 125 QIVKRLLLTSEKSYERKIKEAILAYRLEKYLSKDEILTIYLNQIYLG----GGAYGVEAA 180

Query: 286 SQFFFSQPLSELKLHQIALLVGMVKGPSYYNPRRHPERALARRNLVLDLVAEQGVASQAE 345
           ++ +F + ++EL L + A++ G+ + PS YNP R P+    R+  VL  + + G  ++AE
Sbjct: 181 ARTYFGKHVNELSLAEAAVIGGLPQAPSKYNPFRDPDATRQRQMYVLHRMLDLGWINRAE 240

Query: 346 VDAAKKMPLGVTKRGSLADSSFPAFLDLVKRQL---------------RQDYRDEDLTEE 390
            D A   PL               +L+ V+RQL                  Y ++ + E 
Sbjct: 241 YDEAVAQPLVYRSMDDSGWREGAWYLEEVRRQLIDFFSEANVKRLGLKVDRYGEDAIYEL 300

Query: 391 GLRIFTSFDPILQMKAETSMSETFKRLAGRKG 422
           GL + TS +P+ Q  AE ++       + R G
Sbjct: 301 GLHVRTSMEPLHQSAAEKALRNGLNDASHRHG 332