Pairwise Alignments

Query, 691 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease from Pseudomonas putida KT2440

Subject, 615 a.a., exodeoxyribonuclease V, alpha subunit from Pseudomonas stutzeri RCH2

 Score =  395 bits (1016), Expect = e-114
 Identities = 282/650 (43%), Positives = 362/650 (55%), Gaps = 81/650 (12%)

Query: 43  LRALDRAFVSFLEERAPGSDPLLLLAAALASHQLGHGHVCLDLQQTLAE---PDFALSLP 99
           L  L+RAFV+ L+   P +   +LLAAAL    L  G VCL L +   +   PD   SLP
Sbjct: 8   LGPLERAFVASLQRLDPHASEPVLLAAALCCEALADGDVCLPLGRLAGKRPWPDQDFSLP 67

Query: 100 PEGDALIGPLLLPSQLLANLDLNAWLQRISASPLVAAGDTPGQQARPLVRSGERLYLRRY 159
           P                    L  W  ++ AS L+ A   PG  A PL+ SGERLYL RY
Sbjct: 68  P--------------------LATWRAQLDASELIGA---PGDYA-PLILSGERLYLARY 103

Query: 160 WSYERRIDQALRQRLSQA-EAPPADLPERLAQLFEGGAPAGQVDWQKLACALATRAGFSI 218
            +YE+++ + L  R + A +   A L + LA+LF     +   DWQ+LA A A R   ++
Sbjct: 104 QAYEQQLAEQLLTRAADAPDVDEAQLSDSLARLFAFNQQSP--DWQRLAAAQAVRRRLAV 161

Query: 219 ITGGPGTGKTTTVVRLLA-LLQAPAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQV 277
           I+GGPGTGKTTTVVRLLA LL+ P    G  L I LAAPTGKAAAR+ E+I      L V
Sbjct: 162 ISGGPGTGKTTTVVRLLAALLEQPG---GERLAIGLAAPTGKAAARMAEAIRNAKAELPV 218

Query: 278 SAEVRGQIPTEVSTVHRLLGSRPGSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDA 337
           S  V+  +P E  T+HRLLGSR  S   RH A NPL LDVLVVDEASM+DL +MA L+ A
Sbjct: 219 SDAVKDALPDEARTLHRLLGSRGDSPRVRHDAANPLALDVLVVDEASMVDLALMAKLVAA 278

Query: 338 LPPRARLVLLGDKDQLASVEAGAVLGDLCRDAEEGFYSPATAAWLQQVSGESLAGSGLKA 397
           LPP+ARL+LLGDKDQLA+VEAGAV  +LC     GF S   AA LQ+++G+++       
Sbjct: 279 LPPKARLILLGDKDQLAAVEAGAVFAELCEG--RGFDS-QEAADLQRITGQNV------P 329

Query: 398 GDEQRHPLAQQVVMLRFSRRFGEGSGIGQLARLVNRQDAHAARNLLAAPPADVHSLSLKH 457
            +  R  L   VV+L  S RF   SGIG+LAR +N  DA     LL     D+ + +   
Sbjct: 330 VETPRSRLGDAVVLLTHSHRFAGDSGIGELARRINGGDAKGTVALLQEGRPDL-AWNAAP 388

Query: 458 EQDRAFDRLLLDGLNRGTDGPQGYRSYLRTLGRYRPALDTAFDDPAWEQWAGKVLRSFED 517
                 +RL            QGY  YL+ + +  P+   AF+             +F  
Sbjct: 389 SPAALIERL-----------EQGYAPYLQAVRQADPS--AAFE-------------AFNG 422

Query: 518 FQLLCAVRRGAWGVEGLNERV-ARVLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLMNGDI 576
           F+ L A R GA+GV G+NE + AR     G + +++ WY GR V+V +NDY LGL NGDI
Sbjct: 423 FRALTAQREGAFGVTGINEALEARFKRRLG-VPARERWYPGRAVMVRQNDYALGLFNGDI 481

Query: 577 GIALRLPDEHGQPLLRVAFPRNDGSGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTAL 636
           G+ LR   E G   LRV F   +G  G R   P+RL   ++ FAMTVHKSQGSEF+   L
Sbjct: 482 GLCLR--TEQG---LRVFF---EGDDGYRGFAPARLPSHDSAFAMTVHKSQGSEFAEVLL 533

Query: 637 VLPEALNPVLTKELVYTGITRAKHCFSLVEPRQGIFEEAVARKVRRISGL 686
            LPE  +P+LT+ L YTGITRAK     +        EAV  +  R +GL
Sbjct: 534 ALPEQPSPLLTRSLFYTGITRAKRKVE-IWALPARLAEAVNTRAERAAGL 582