Pairwise Alignments

Query, 691 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease from Pseudomonas putida KT2440

Subject, 662 a.a., exodeoxyribonuclease V, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  386 bits (991), Expect = e-111
 Identities = 286/695 (41%), Positives = 368/695 (52%), Gaps = 85/695 (12%)

Query: 30  LLQLLDRWVERGWLRALDRAFVSFLEERAPGSDPLLLLAAALASHQLGHGHVCLDLQQT- 88
           L QLL  W + G L  LDR F   ++      D L  L  AL S QL   H CL L Q  
Sbjct: 8   LSQLLKHWQQEGLLTPLDRHFALQMQALHSDGDDLFTLICALLSRQLSQQHTCLPLTQID 67

Query: 89  ------LAEPDFALSLPPEGDALIGPLLLPSQLLANLDLNAWLQRISASPLVAAGDTPGQ 142
                   +P   L L P+  AL G L                Q  + SP        G+
Sbjct: 68  KNNPLHEQQPQCQLELTPQ--ALAGQLT---------------QYQAISP------ADGE 104

Query: 143 QARPLVRSGERLYLRRYWSYERRIDQALRQRLSQ--AEAPPADLPERLAQLFEGGAPAGQ 200
              PL+  G+RLYL+RY+ +E ++ + L  RL+Q    A P  +   L  LF G A   +
Sbjct: 105 LNTPLILDGDRLYLQRYYQFETQVAERLT-RLNQPITVAAPDKVACILNILFAGQAE--K 161

Query: 201 VDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQAPAVEQGRPLRIRLAAPTGKA 260
            DWQK+A A A     ++ITGGPGTGKTTTV +LL LL    +EQ   L I+L APTGKA
Sbjct: 162 PDWQKVATATAFSQKLAVITGGPGTGKTTTVTKLLLLL---CLEQ--QLTIKLVAPTGKA 216

Query: 261 AARLTESIGQQVERL---------QVSAEVRGQIPTEVSTVHRLLGSRPGSRHFRHHAGN 311
           AARL+ESI     RL         ++  E   Q+P E +T+HRLLG  PGS  FRHH  N
Sbjct: 217 AARLSESIKASKARLAQELAPYGDELDLEQLKQVPEEAATLHRLLGVIPGSHRFRHHKDN 276

Query: 312 PLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGAVLGDLC----- 366
           PL LD+L++DEASM+DL MM  LL+ALP   RL+LLGD+DQLASVEAGAVL D+C     
Sbjct: 277 PLRLDLLILDEASMVDLPMMHKLLEALPEHTRLILLGDQDQLASVEAGAVLADICAGLKQ 336

Query: 367 -RDAEEGF---YSPATAAWLQQVSGESLAGSGLKAGDEQRHPLAQQVVMLRFSRRFGEGS 422
               E G+   YS   AA L Q++ E L+        + R  L   + ML  S RF   +
Sbjct: 337 TSSQESGWRMRYSQEKAALLSQLTNEDLSNY-----IDARPALGDSLAMLMHSHRFKGDA 391

Query: 423 GIGQLARLVNRQDAHAARNLLAAPPADVHSLS-LKHEQDRAFDRLLLDGLNRGTDGPQGY 481
           GIGQLA  VNR+D      +L+        LS L+H+     +  L   + +  D    Y
Sbjct: 392 GIGQLAGAVNRRD---LTGILSVWQKGYDELSWLEHQLSPQGNAGLKALMAQSVD---KY 445

Query: 482 RSYLRTLG-----RYRPALDTAFDDPA-WEQWAGKVLRSFEDFQLLCAVRRGAWGVEGLN 535
           R YL  +G          +D   D     ++ A +++  F +F++LCA+R G +GVEG+N
Sbjct: 446 RPYLDLVGHLANKEQAQEVDKEADQQLDLDEIANQIITRFNNFRILCAMRAGEYGVEGIN 505

Query: 536 ERVARVLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDEHGQPLLRVAF 595
             V + L +A LI     +Y GRP+++  NDY LGL NGDIG+   LP       L   F
Sbjct: 506 AAVTQALKDAQLIQPSSEFYAGRPIIIQSNDYNLGLFNGDIGVI--LPGHGPTHRLMAYF 563

Query: 596 PRNDGSGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPE----ALNPVLTKELV 651
            + DGS  +  VLP+RL   ET +AMTVHKSQGSEF   A VLP     A   +LTKELV
Sbjct: 564 VQADGS--LLKVLPARLPSHETCYAMTVHKSQGSEFQQVAFVLPPRPSVAQRQLLTKELV 621

Query: 652 YTGITRAKHCFSLVEPRQGIFEEAVARKVRRISGL 686
           YT ITRAK  FS +   Q +FE A ++   R SGL
Sbjct: 622 YTAITRAKGHFSCL-GSQAVFEAACSQVTLRASGL 655