Pairwise Alignments

Query, 691 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease from Pseudomonas putida KT2440

Subject, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  373 bits (958), Expect = e-107
 Identities = 285/718 (39%), Positives = 370/718 (51%), Gaps = 103/718 (14%)

Query: 28  ADLLQLLDRWVERGWLRALDRAFVSFLEERAPGS--DPLLLLAAALASHQLGHGHVCLDL 85
           A L +LL  W +   + ALDR F   +    P    +PL +L  AL S QL   H CL L
Sbjct: 21  APLTELLKYWEKERLITALDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQHTCLVL 80

Query: 86  QQTLAEPDFALSLPPEGDALIGPLLLPSQLLANLDLNAWLQRISASPLVAA---GDTPG- 141
           +                       ++P+  +A   +N    R+S + L+ A    D  G 
Sbjct: 81  EY----------------------IVPTNPMAE-PINRCQIRLSLTELIDALQHFDAIGA 117

Query: 142 -QQARPLVRSGERLYLRRYWSYERRIDQALRQ----RLSQAEAPPA--------DLPERL 188
               +PL+    RLYL RY  +E ++  AL +     LS   + P          L  +L
Sbjct: 118 PNSNKPLIFEDGRLYLERYHHFETQVASALTRLSAAALSLTPSQPLASDNQSLLQLRRQL 177

Query: 189 AQLFEGGAPA--GQVDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQAPAVEQG 246
             LF   A      +DWQK+A A A     ++ITGGPGTGKTTTV +LL L Q      G
Sbjct: 178 DCLFPSAAHTVEANIDWQKVATATALGNKLAVITGGPGTGKTTTVTKLLLLQQL-----G 232

Query: 247 RPLRIRLAAPTGKAAARLTESIGQQVERL---------------QVSAEVRGQIPTEVST 291
            P +IRL APTGKAAARL+ESI     RL               QV      +IP E ST
Sbjct: 233 TPKQIRLVAPTGKAAARLSESIKASKARLEQELQQASKENPQENQVLLTALSRIPEEAST 292

Query: 292 VHRLLGSRPGSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKD 351
           +HRLLG  P S HFRHH GNPL LD+L+VDEASM+DL MM  LL ALP  A L+LLGD+D
Sbjct: 293 LHRLLGVIPNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHAGLILLGDQD 352

Query: 352 QLASVEAGAVLGDLCRDAEEGF---------YSPATAAWLQQVSGESLA---GSGLKAGD 399
           QLASVEAGAVL D+C   ++           YS A A  L  ++G +L+    S  K GD
Sbjct: 353 QLASVEAGAVLADICAGLKQASTQHTEWKMRYSQAQAEQLTALTGFNLSHFIHSEPKIGD 412

Query: 400 EQRHPLAQQVVMLRFSRRFGEGSGIGQLARLVNRQDAHAARNLLAAPPADVHSL--SLKH 457
                    + ML  S RF   +GIG LA  VNR D     ++  +  A++  L  S+ H
Sbjct: 413 --------SLCMLTHSHRFKGDAGIGLLASAVNRADLAGILSVWQSGLAELTWLEHSVDH 464

Query: 458 EQDRAFDRLLLDGLNRG-----TDGPQGYRSYLRTLGRYRPALDTAFDDPAWEQWAGKVL 512
            Q +A  ++     N G         + Y  YLR L +   A      +P     A + +
Sbjct: 465 SQTQA--KISEPSNNTGLKALLAQACEQYGDYLRLL-QPTHATPIHTSEPFCPPSAMEAI 521

Query: 513 RSFEDFQLLCAVRRGAWGVEGLNERVARVLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLM 572
             F  +++LCA+R G +GVEG+N  V + L  A LI  QQ +Y GRP+++  NDY LGL 
Sbjct: 522 AKFNQYRILCAMRTGDYGVEGINLAVTKALAQAKLIQPQQEFYLGRPIIIQSNDYNLGLF 581

Query: 573 NGDIGIALRLPDEHGQPLLRVAFPRNDGSGGVRFVLPSRLNEVETVFAMTVHKSQGSEFS 632
           NGDIG+ L+  DE     L   F + DG   +  VLP+RL   ET +AMTVHKSQGSEF+
Sbjct: 582 NGDIGLILQ--DEERADRLMAHFIKADGK--LLKVLPARLPSHETCYAMTVHKSQGSEFN 637

Query: 633 HTALVLPEALNPV----LTKELVYTGITRAKHCFSLVEPRQGIFEEAVARKVRRISGL 686
             ALVLP A + V    LTKEL+YT ITRAK  FS +  +Q +FE A  +  +R SGL
Sbjct: 638 RVALVLPPAPSLVQWQLLTKELIYTAITRAKQHFSCLGTQQ-VFERASLQATQRASGL 694