Pairwise Alignments

Query, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

Subject, 455 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Synechococcus elongatus PCC 7942

 Score =  103 bits (257), Expect = 9e-27
 Identities = 112/385 (29%), Positives = 164/385 (42%), Gaps = 64/385 (16%)

Query: 10  YATQLDAKVARLRELLAPFGAPE----PAVFDSPREHYRLRAEFRLWREDGQRHYAMFAP 65
           Y  Q++AK   +++ +   G  E    P +       YR +  + L R D     A +  
Sbjct: 95  YPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLGYRNKVSYPLRRSDRGEVQAGYFR 154

Query: 66  GEKHKAILIDDFPIASERINALMPRLKAA-----WQASEE---------LGNRLFQVEFL 111
              H+ I ++  P+  +R+N L+  +KA      W   +E         LG R+ Q    
Sbjct: 155 KGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTRSRGLRHLGLRIGQ---- 210

Query: 112 TTLAGDAMITMCYHRPLDEAWEVEAR------QLAEALGVSV-IGRSKGKRLV------- 157
               G+ +IT+      D+  EVEA+           +GV + +  S G R++       
Sbjct: 211 --RTGEILITLIATD--DQLPEVEAQAEQWLTDYPNVVGVCLNLNPSHGNRILGDETHCL 266

Query: 158 IGRDYAVEKLDVAGRVFSYRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNG 217
            GR Y +E LD          PE  F Q N    +++L    + +    D L +LYCG G
Sbjct: 267 AGRPYLIECLDDLEFAIG---PE-TFFQVNTEQAERLLPILKDFL-RGSDRLFDLYCGVG 321

Query: 218 NFTLPLATRVRQVLATEISKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRR 277
             TLPLA+ V  VL  EI   SV  A  N D N + NV   R  A E+  A     P   
Sbjct: 322 TLTLPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEF-RAGAVEILLAQIPESP--- 377

Query: 278 LEGIDLKSYQFGTVFVDPPRAGMDPDTCEL--TRRFERILYISCNPETLAANIAQL--QD 333
                        V +DPPR G +P   E+   R+ +RI Y+SCNP TLA ++  L   D
Sbjct: 378 -----------DAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGD 426

Query: 334 THRIERCALFDQFPYTHHMESGVLL 358
            +R+      D FP T H+E+  LL
Sbjct: 427 RYRLLLVQPLDFFPQTAHVETVALL 451