Pairwise Alignments

Query, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

Subject, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  362 bits (930), Expect = e-105
 Identities = 182/362 (50%), Positives = 247/362 (68%), Gaps = 5/362 (1%)

Query: 4   AFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHYAMF 63
           A DP  Y  QLD K  +L +L   F  PE  VF S + HYR+RAEFR+W E    +Y MF
Sbjct: 5   AMDPQQYDAQLDVKRQKLAQLFVDFETPELEVFASQKAHYRMRAEFRVWHEGEDLYYYMF 64

Query: 64  APGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMITMC 123
              +  K I  + F  AS+ IN +MP L AA + +  L ++LFQV+FL+TL+G+ ++++ 
Sbjct: 65  DKAQNQK-IRCEQFLPASQLINDMMPELMAALRPNPVLRHKLFQVDFLSTLSGEILVSLL 123

Query: 124 YHRPLDEAWEVEARQLAEALG----VSVIGRSKGKRLVIGRDYAVEKLDVAGRVFSYRQP 179
           YH+ LD  W+ EA+ L EAL     V +IGR++ ++LV+ RD+ +E L V G+  +Y+Q 
Sbjct: 124 YHKQLDAQWQEEAQALKEALSSKFKVDIIGRARKQKLVMDRDFVIESLPVNGKQLTYKQV 183

Query: 180 EGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEISKTS 239
           E +FTQPNG V  KML WA +   +   DLLELYCGNGNF++ LA    +VLATE++K S
Sbjct: 184 ENSFTQPNGEVAIKMLEWAIDITRDSSGDLLELYCGNGNFSIALAQNFNRVLATELAKPS 243

Query: 240 VNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDPPRAG 299
           V++A  N++ N +DN++++R+SAE+ T AL + R FRRLEG+DL SY   T+FVDPPRAG
Sbjct: 244 VDSAQYNIEANQIDNLQIIRMSAEDFTDALAKKRSFRRLEGVDLDSYDCNTIFVDPPRAG 303

Query: 300 MDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESGVLLV 359
           +D +T  + + +ERILYISCNP TL  N+  L  TH+I R ALFDQFPYT HMESGVLL 
Sbjct: 304 LDDNTLSMVQGYERILYISCNPNTLLDNLKVLDKTHKITRFALFDQFPYTDHMESGVLLE 363

Query: 360 RR 361
           RR
Sbjct: 364 RR 365