Pairwise Alignments

Query, 456 a.a., DNA repair enzyme from Pseudomonas putida KT2440

Subject, 454 a.a., DNA repair protein RadA (RefSeq) from Shewanella amazonensis SB2B

 Score =  562 bits (1448), Expect = e-165
 Identities = 279/456 (61%), Positives = 353/456 (77%), Gaps = 4/456 (0%)

Query: 1   MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGR-AGWTGQQ-A 58
           MAK K  Y C ECG  FP+W GQC  C  WN++ E  +  G A    SGR +G+ G   +
Sbjct: 1   MAKNKTAYVCNECGQDFPRWQGQCSACLEWNSITEVRL--GAATVARSGRFSGYAGAGVS 58

Query: 59  QIKTLAEVSVEEIPRFTTSSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAV 118
           ++KTL ++ + E+PR  +S TE DRVLGGG+V GS +LIGG PG GKST+LLQTLC +A 
Sbjct: 59  EVKTLDQIDLNELPRIPSSFTEFDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCQLAE 118

Query: 119 GMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIATARVEKPRVMVIDSIQT 178
            MPALYVTGEES QQVAMR+ RLGLP  +LK+++ET +ET+   A  E+P+++V+DSIQ 
Sbjct: 119 VMPALYVTGEESLQQVAMRAHRLGLPTSKLKMLSETSVETLCDIALKEQPKLIVVDSIQV 178

Query: 179 IFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVL 238
           +    +QS+PG VAQVRES + L R+AKQ+G A+ +VGHVTK+GSLAGP+VLEH +D  +
Sbjct: 179 MHMSDVQSSPGSVAQVRESASFLTRFAKQNGIAVIMVGHVTKDGSLAGPKVLEHCIDCSV 238

Query: 239 YFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVM 298
            FEG+SD R R LR+ KNRFGA+NELGVF MT+RGLKEV+NPSAIFL+R +E   GS+VM
Sbjct: 239 MFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEASSGSLVM 298

Query: 299 ATWEGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLN 358
             WEGTRP+LVE+Q LVD+S L+NPRRV +G+D NRLAMLLAV+HRHGG+   DQDVF+N
Sbjct: 299 VVWEGTRPLLVELQVLVDNSALSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFVN 358

Query: 359 VVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSGEVRPVPSGQERLKEAAK 418
           VVGGVKV ET++DL LL A++SS R   L   L+ FGE+GLSGE+RPVP+GQERL EAAK
Sbjct: 359 VVGGVKVTETSADLTLLLAMVSSFRGEVLPRDLVAFGEVGLSGEIRPVPNGQERLVEAAK 418

Query: 419 HGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDAL 454
           HGFKRAIVP+ N PK+ P G++VI V++L +AL AL
Sbjct: 419 HGFKRAIVPRANMPKKPPEGMEVIGVSKLAEALAAL 454