Pairwise Alignments

Query, 377 a.a., Ribonuclease D from Pseudomonas putida KT2440

Subject, 371 a.a., ribonuclease D (RefSeq) from Shewanella amazonensis SB2B

 Score =  227 bits (579), Expect = 4e-64
 Identities = 129/359 (35%), Positives = 208/359 (57%), Gaps = 7/359 (1%)

Query: 3   IEIHWIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLI 62
           +E H+++DD++L      + Q   + +DTEF+R  T+Y K GLIQ+ DG    LIDPL I
Sbjct: 2   LEFHYVKDDEALTALVDQYSQSRLLVLDTEFVRTRTYYAKLGLIQVYDGNTLALIDPLDI 61

Query: 63  GNWQPLADLLEDSAVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGYSR 122
            +      LL +  ++K++H+CSEDLEV  R     P PLFD+Q+AA    +G  +GY++
Sbjct: 62  QDLSGFWALLTNPNILKLVHSCSEDLEVFARYGKVQPTPLFDSQIAAALSGMGHGLGYAK 121

Query: 123 LVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSD-DKYAWVL 181
           LV+E LG  L KGE+R+DW++RPL++ Q+ YAA D  +L +L+  L  +L    ++ WVL
Sbjct: 122 LVEECLGQTLDKGESRTDWIKRPLTDAQLQYAANDVFYLYQLYPQLEQKLKTLGRFDWVL 181

Query: 182 EDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNRILK 241
           E+GA L     +  E  + Y  VK A++L P+QLA L+ L AWR   A +RD+    ++K
Sbjct: 182 EEGARLTEGRLQRPEAATAYLKVKNAFQLTPKQLAYLKVLAAWRLERALDRDLALGFVIK 241

Query: 242 EHSLWPMAKSQPNNLSALAKIDEMHPRTIRQDGEFLIQLIKRAASLPAEQWPAPLPEPLP 301
           +H+L  +AK  P ++S L KI+++     R  G+ +++++++A     E  PA + + + 
Sbjct: 242 DHALIALAKKPPRSISDLLKINDLSEHEKRIHGKDILKVLQKA---DVENPPAAI-DVIA 297

Query: 302 IEAA--GLLKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWR 358
           ++ A     K ++A      ER G+  EL   K+ +   L+  +       P  L+GWR
Sbjct: 298 LKPAYKQAFKNIKAALTEICEREGLPSELFCSKRHIHEYLEYRWQGDAEDTPLLLQGWR 356