Pairwise Alignments

Query, 377 a.a., Ribonuclease D from Pseudomonas putida KT2440

Subject, 368 a.a., ribonuclease D (RefSeq) from Shewanella loihica PV-4

 Score =  218 bits (555), Expect = 2e-61
 Identities = 128/368 (34%), Positives = 207/368 (56%), Gaps = 13/368 (3%)

Query: 7   WIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIGNWQ 66
           ++ DD SL E    + Q   + +DTEF+R  T+Y K GLIQ+ DG+   LIDP+ + +  
Sbjct: 5   YVEDDASLTELVDKYRQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAVSDLS 64

Query: 67  PLADLLEDSAVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGYSRLVQE 126
               LLE   ++ VLH+CSEDLEVL R     P+ LFD+Q+AA +   G  MGY++LV+ 
Sbjct: 65  AFWALLERDDMISVLHSCSEDLEVLARYGRCQPKVLFDSQIAAAFCGWGHGMGYAKLVEH 124

Query: 127 VLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSDD-KYAWVLEDGA 185
            LG++L KGE+R+DW++RPLS+ Q+ YAA D  +L  L+  L  +L +  +  W+LE+G 
Sbjct: 125 CLGVQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQESGRMPWLLEEGE 184

Query: 186 ELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNRILKEHSL 245
            +        + ++ Y  VK A++L+P+QLA L+ L  WR ++A +RD+    ++K+H+L
Sbjct: 185 RMTQGRLESPDGDTAYLKVKNAFQLSPKQLAYLKVLAKWRLQKALDRDLALGFVIKDHAL 244

Query: 246 WPMAKSQPNNLSALAKIDEMHPRTIRQDGEFLIQLIKRAASLPAEQWPAPLPEPLPIEA- 304
             +AK QP +   + ++ E+  +  R   + +I  + +A           LPE + + A 
Sbjct: 245 LALAKKQPKSTGEIFRMTELTEQEKRLHAKAIIAEMAKADL-------DNLPEAIDVIAL 297

Query: 305 -AGLLKQLRAIGQA---EGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRE 360
             G     +AI QA     E   +  EL+  K+ +   L+  + +G  ++P  L+GWR E
Sbjct: 298 KPGYKSAFKAIKQALTQVAETHQVPMELLGSKRHIHEYLQWRWNDGQGEMPLVLQGWRGE 357

Query: 361 RMGQALLD 368
               AL +
Sbjct: 358 LSKDALAE 365