Pairwise Alignments

Query, 377 a.a., Ribonuclease D from Pseudomonas putida KT2440

Subject, 367 a.a., ribonuclease D (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  208 bits (530), Expect = 2e-58
 Identities = 120/364 (32%), Positives = 205/364 (56%), Gaps = 9/364 (2%)

Query: 7   WIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIGNWQ 66
           ++ D+ SL      + Q P + +DTEF+R  T+Y K GLIQ  DG+   LIDP+ + +  
Sbjct: 4   YVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIALPDLS 63

Query: 67  PLADLLEDSAVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGYSRLVQE 126
               LL++  ++K++H+CSEDLEV      + P PLFD+Q+AA    +G  +GY++LV+ 
Sbjct: 64  AFWALLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGHGLGYAKLVET 123

Query: 127 VLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRL-SDDKYAWVLEDGA 185
            LG  + KGE+R+DW++RPL++ Q+SYAA D ++L +L+  L  +L + D+  W+ E+G 
Sbjct: 124 CLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDRLDWLYEEGE 183

Query: 186 ELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNRILKEHSL 245
            +        + E+ Y  VK A++L   QLA L+ L  WR  +A  RD+    ++K+H L
Sbjct: 184 RMTEGRLASPDAETAYLKVKNAFQLTEHQLAYLKVLAKWRLEKALARDLALGFVIKDHGL 243

Query: 246 WPMAKSQPNNLSALAKIDEMHPRTIRQDGEFLIQLIKRA-ASLPAEQWPAPLPEPLPIEA 304
             +AK QP ++S L K++++  +  R  G+ ++++++ A  S P E     L + L ++ 
Sbjct: 244 IALAKKQPKSMSDLLKLNDLTEQEKRIHGKDILRVMQTADLSNPPE-----LVDVLALKP 298

Query: 305 A--GLLKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRERM 362
                 K ++       E+  I  E++  K+ +   L+  +     +LP  L GWR E  
Sbjct: 299 GYKSAFKTIKTSLTELCEQHAILMEMLGSKRHIHEYLQWRWDKQQGELPTVLSGWRGEIA 358

Query: 363 GQAL 366
            ++L
Sbjct: 359 AESL 362