Pairwise Alignments

Query, 377 a.a., Ribonuclease D from Pseudomonas putida KT2440

Subject, 202 a.a., 3- 5 exonuclease domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 52/174 (29%), Positives = 73/174 (41%), Gaps = 15/174 (8%)

Query: 4   EIHWIRDDQSLAEHCRDWHQLPFVAVDTE----FMRVDTFYPKAGLIQIGDGQRAFLIDP 59
           E+  +R ++ LA+          +  DTE    F +     P   L+Q+      +LI  
Sbjct: 29  EVRLVRTEEELADALDVLRSDSVLGFDTETRPTFRKGKVNLPS--LVQLACADVVYLIQL 86

Query: 60  LLIGNWQPL----ADLLEDSAVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLG 115
               NW PL    ADLL D A++K   A  +D+  L +L       + D    A  L L 
Sbjct: 87  ----NWVPLGEMLADLLSDPAIIKTGVAVRDDIRDLQKLYAFRDGGVVDLGEVARDLGLE 142

Query: 116 FSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLR 169
            + G   L    LGI + KG   S+W  R L   QV YAA DA    E+   +R
Sbjct: 143 -THGLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREIHISMR 195