Pairwise Alignments

Query, 377 a.a., Ribonuclease D from Pseudomonas putida KT2440

Subject, 385 a.a., ribonuclease D (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  159 bits (402), Expect = 1e-43
 Identities = 114/369 (30%), Positives = 185/369 (50%), Gaps = 17/369 (4%)

Query: 8   IRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQI---GDGQR-AFLIDPLLIG 63
           + D  +LA+ C    +  +V VDTEF+R  T+Y K  L+Q+   G+G+  A L+DPL  G
Sbjct: 4   LTDTAALADFCARAAEHDYVTVDTEFLRERTYYAKLCLVQLAYPGEGEETAVLVDPLAEG 63

Query: 64  -NWQPLADLLEDSAVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGYSR 122
            +  P+ DL  +  VVKV HA  +DLE+     G  P+PLFDTQ+AA     G  +GY  
Sbjct: 64  MSLAPMLDLFRNPDVVKVFHAARQDLEIFFVEHGVFPEPLFDTQVAAMVCGFGEQVGYET 123

Query: 123 LVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRL-SDDKYAWVL 181
           LV+++    L K    +DW  RPLS+ Q  YA  D  HL  ++  L   +    + AWV 
Sbjct: 124 LVRKIARESLDKTSRFTDWSHRPLSKAQKKYALADVTHLRVIYEYLAAAIDKTGRRAWVE 183

Query: 182 EDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNRILK 241
           E+   L+      V+P+  +R VK     + + L+ +R L  +RE  A+ R++PR+R+ K
Sbjct: 184 EELQGLLDPEIYVVDPDEAWRRVKTRTN-SGKFLSTVRALARFRETFAQGRNIPRSRVFK 242

Query: 242 EHSLWPMAKSQPNNLSALAKIDEMHPRTIRQD-GEFLIQLIKRAASLPAEQWPA--PLPE 298
           + +L  +A ++P ++  L +   +     R +  E ++  +    +   E +P      E
Sbjct: 243 DDALLELASTKPQSVQDLGRSRLLLREARRGEIAEGILAAVAEGQATEPEDYPEIDRSRE 302

Query: 299 PLPIEAAGLLKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWR 358
            L +  A L   LR + +A+ E  G+A  ++     L+A+              +L+GWR
Sbjct: 303 KLQVNTA-LADLLRVLLKAKSEDAGVASRMIASAADLDAMAAG------EMTVQALKGWR 355

Query: 359 RERMGQALL 367
            +  GQ  L
Sbjct: 356 AQVFGQDAL 364