Pairwise Alignments

Query, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 423 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  315 bits (806), Expect = 2e-90
 Identities = 187/391 (47%), Positives = 242/391 (61%), Gaps = 7/391 (1%)

Query: 17  LATLIRLLGDFDLAEEAMHDAFFIAVERWQRDGIPANPRAWLVSVGRFKAIDALRRRVRF 76
           +  L+R   + DLAEEA  +A   A++ W R G P +P AWL+ VGR   ID +RR+ R 
Sbjct: 19  MGALLRYFRNLDLAEEAFQEACIRALKNWPRTGPPRDPAAWLIFVGRNSGIDKVRRQSRE 78

Query: 77  DRSQAD--LSML--LEGQAQDPSEEELLADDRLRLIFTCCHPALSADAQVPLTLREVCDL 132
                +  LS L   E +  D  +     DD LRL+F C +PAL A  Q+ L LR V  L
Sbjct: 79  TALPPEELLSDLDDRESELADRLDGAHYRDDILRLLFVCSNPALPATQQIALALRIVSGL 138

Query: 133 TTEQIARAFLQSPATIAQRIVRAKAKIRDAGIPYQVPELSELPERLESVLRVIYLVFNEG 192
           +  QIARAFL S A + QRI RAKA++  AGIP++ P+  +  ERL +V  +IYLVFNEG
Sbjct: 139 SVRQIARAFLVSEAAMEQRITRAKARVAAAGIPFETPDAVDRAERLAAVATMIYLVFNEG 198

Query: 193 YSASSGETLLQQALSDEAIRLARLLVQLLP-DPEAVGLLALMLLQASRQRARIDGQGDLV 251
           YSA +G   +   L DEAIRL+RLL++L P +PE +GL AL+LLQ SR RAR D  G +V
Sbjct: 199 YSAMNGPEGVSADLCDEAIRLSRLLLRLFPAEPEMMGLTALLLLQHSRARARFDANGAVV 258

Query: 252 VLEQQDRSLWDRQFIAEGCALVRQALQSRAFGAYTVQAAIAAVHAEAATAEETDWGEIVG 311
           +LE QDR LW R  I E  A++ +A++ R  G Y +QAAIAA+HA A   E+TDW EI  
Sbjct: 259 LLEDQDRRLWSRPMITEALAMIDKAMRHRRPGPYQIQAAIAALHARAERPEQTDWEEIDL 318

Query: 312 LYDVLQRYWPSAVVALNRAVALAKRDGPEAGLREVEGILARGELLDYHLAHAARAELHCQ 371
           LY  L+R  PS VV LNRAVA++KR+GPEA L  VE +  R  L  Y   H  R  L  Q
Sbjct: 319 LYQALERLQPSPVVTLNRAVAVSKREGPEAALAMVEPLGER--LSGYFYYHGLRGGLLKQ 376

Query: 372 LGQVQEARAAWQQALALTRQAPERRHIERRL 402
           LG+  EAR A+ +A+AL   A E  +I  +L
Sbjct: 377 LGRACEARTAFDRAIALATNASEAAYIRMQL 407