Pairwise Alignments

Query, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 182 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 6   EAVYRQESRRILATLIRLLGDFDLAEEAMHDAFFIAVERW----QRDGIPANPRAWLVSV 61
           + +Y     ++   ++R+L   DLAEE + DA+   V+ W    Q D   A+P  W+ S+
Sbjct: 23  QRLYDATRAKLFGVVLRILRRQDLAEEVIQDAY---VKIWNNAAQFDSTVASPITWMASI 79

Query: 62  GRFKAIDALRRRVRFDRSQADLSMLLEGQAQDPSEEELLADDRLRLIFTCCHPALSADAQ 121
            R +AID  R+R      +   +  +  +  DP     + ++  RL+   C   L  D Q
Sbjct: 80  ARNRAIDVARKRGEVSIEEEPSANDVAAETPDPLARREMTEELKRLLE--CIGRLEPDRQ 137

Query: 122 VPLTLREVCDLTTEQIARAFLQSPATIAQRIVRAKAKIR 160
             + L      + EQ+   F     TI   + R+   +R
Sbjct: 138 KLVLLAYYNGWSREQLGAKFGAPANTIKTWLRRSLLDVR 176