Pairwise Alignments

Query, 307 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 302 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  229 bits (585), Expect = 5e-65
 Identities = 123/286 (43%), Positives = 175/286 (61%), Gaps = 1/286 (0%)

Query: 1   MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQEQLGVPLLRIDGRKA 60
           M   + TL+QWR LQAVVD+GG+AQAAE L++SQSS+++ VA++Q QLG+ LL + GRKA
Sbjct: 1   MTRAKSTLEQWRILQAVVDYGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVRGRKA 60

Query: 61  VLTEAGNVLLRRSRHLVKQASQLEDLAHHMEQGWEAEVRLVVDAAYPSARLVRALAAFMP 120
            LT  G VLLRRSRH+ +  ++LE LA ++EQGWE  + +  +  YP   LV AL+ F+P
Sbjct: 61  YLTTQGEVLLRRSRHVTQSVNELEQLASNLEQGWEPTLTIAREIVYPMDSLVCALSEFLP 120

Query: 121 QSRGCRVRLREEVLSGVEEVMHEGIADLAI-SSYSIGGYLGAELSAVEFIAVAHPEHSLH 179
            SRG R+ + + V++G +E++ +  AD+AI +     GYL   L   E   V HP H L 
Sbjct: 121 HSRGTRIIMLDSVITGTQELILQNKADIAICAGIPPKGYLPEPLCEQELYLVCHPSHPLA 180

Query: 180 RLGRELTFQDLESQLQVVIRDSGRAQPRDVGWLGAEQRWTVGSLGTAATFVSSGLGFAWL 239
            +G     + L   LQ+VI+D+G     D+GWL AEQRWTV +   A   ++ G+GF W+
Sbjct: 181 DMGILDDDKLLAQHLQLVIKDTGVQSNIDIGWLKAEQRWTVSNFHEAKVILNQGIGFCWI 240

Query: 240 PRHMIERELREGVLKPLPLDQGGSRHPLFYLYSSKEKTLGPATQIL 285
           P  +I+ EL  G L  L L     R  +  L        GPA+++L
Sbjct: 241 PSFLIQEELAAGKLVRLHLQGSQKRRIMLSLIIPNRDQQGPASKLL 286