Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  280 bits (717), Expect = 7e-80
 Identities = 171/465 (36%), Positives = 249/465 (53%), Gaps = 38/465 (8%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F+   L E L+ A+    + +PTPVQ  AIP  LQGRDL V AQTG+GKT  F LP+L R
Sbjct: 3   FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 62  LV--------DLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKE 113
           L            GPR + R L+L PTRELA Q  +  +++++     S  + GG     
Sbjct: 63  LFPNGHPDKSQRHGPR-QPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121

Query: 114 QAAMLRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKEC 173
           Q   + +  DVL+  PGRLL+    G++DLSHV++L+LDEADRMLDMGF  D++++    
Sbjct: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181

Query: 174 ENREQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQI 233
             + Q LLFSAT     + D+ GK+L +PE + +   +   E   Q++       HK  +
Sbjct: 182 PAKRQNLLFSATFS-KDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPAS-HKRAL 239

Query: 234 AQWLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGS 293
              L+    +++ ++FT T+  A+R+  +L    + A  +HG K Q  R  A+  FK G 
Sbjct: 240 LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGE 299

Query: 294 SKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWN 353
            ++LVATD+AARGLDID L  V+NF++P   ++YVHR+GRTGRAG  G AISL+  ++  
Sbjct: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 354 LMSSIERYLKQQF---------------ERRVIKEVKGTYN-----GPKKVKASGKAAGS 393
           L+ SIER  KQ+                E+  ++E     N     GP+    +G   G 
Sbjct: 360 LLKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGG 419

Query: 394 KKKKVEKKTGDKKAAAK-----RKPT--AKPKANAPLASADGLAP 431
            +K   K  G +K+A+       +P    KP+   P       AP
Sbjct: 420 GRKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAP 464