Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  296 bits (759), Expect = 6e-85
 Identities = 166/409 (40%), Positives = 252/409 (61%), Gaps = 13/409 (3%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           FSQ  L  RLL  ++EL    PTP+Q  AIP  LQG+D+   AQTG+GKTAAF LPL+ R
Sbjct: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 62  LVDLSGPRV----EIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAM 117
            ++    R     EIRAL+L+PTRELAQQ L  +Q +++ T +K   V GG   K Q   
Sbjct: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127

Query: 118 LRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENRE 177
           LR   D+LI TPGRLL+  +  +L L  V+VL+LDEADRMLDMGF  D++R+ +      
Sbjct: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187

Query: 178 QTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWL 237
           QTL FSAT   + ++ +  ++++DP  + +   +  AE  +Q +   D  + K ++  +L
Sbjct: 188 QTLFFSATFD-SKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDK-KRKRELLSYL 245

Query: 238 LANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVL 297
           + ++ + + ++FT TR  +D +   L    +KA  ++G+K Q  R+ A++ FK G  + L
Sbjct: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305

Query: 298 VATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSS 357
           +ATDVAARGLDI  L+ V+N+DMP   ++YVHR+GRTGRAG  GLA+SL++H++   + +
Sbjct: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365

Query: 358 IERYLKQQFERRVIK-----EVKGTYNGPKKVKASGKAAGSKKKKVEKK 401
           IER L  +  +  +K      V    N P+  +++G+++  +K K + K
Sbjct: 366 IERLLNTRLPQEWLKGFEPSPVVHEENSPR--RSAGRSSEKRKLKAQLK 412