Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  260 bits (664), Expect = 6e-74
 Identities = 151/372 (40%), Positives = 221/372 (59%), Gaps = 3/372 (0%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           FSQ  L + L++ VA+L + +PT +Q  AIP+ LQGRDL   AQTG+GKTA+FVLP+L +
Sbjct: 3   FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62

Query: 62  LVDLSGPRVE-IRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK 120
           L      R + +RALIL+PTRELA Q  ++V+ + + T +KS  V GG D + Q   L  
Sbjct: 63  LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID 122

Query: 121 VPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTL 180
             DVL+ TPGRL++      +    +++++LDEADRMLDMGF E + ++     +  Q L
Sbjct: 123 GVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFL 182

Query: 181 LFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLAN 240
           LFSAT     +R++    ++DP  + + +         Q +IT D D  K  +   L+  
Sbjct: 183 LFSATLS-RKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDT-KSALLSHLINE 240

Query: 241 ETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT 300
           + +D+A+IF  T+  A ++   L  + + A   H  + Q  R   +E FK G  K LVAT
Sbjct: 241 QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT 300

Query: 301 DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIER 360
            VAARG+DID L  V+N+D+P   DEYVHR+GRTGRA   G AIS ++ +++  +  IE 
Sbjct: 301 GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIES 360

Query: 361 YLKQQFERRVIK 372
            L    ERRV++
Sbjct: 361 RLGHLIERRVVE 372