Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  273 bits (698), Expect = 8e-78
 Identities = 155/412 (37%), Positives = 246/412 (59%), Gaps = 6/412 (1%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F  ++    +L+A+AE  +   TP+Q  AIP   +G+D+  +AQTG+GKTAAF LP+L +
Sbjct: 3   FESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LVDLSGPR--VEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLR 119
           L+D    R   + RALIL PTREL +Q    ++ +++   +    V GG     QA  LR
Sbjct: 63  LLDTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQKLR 122

Query: 120 KVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQT 179
           K  D+++ TPGRLLE L AGNL L+ V+ L+LDEADRMLDMGF  D+++L + C    QT
Sbjct: 123 KGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKERQT 182

Query: 180 LLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQ-LAEGTRQQIITADHDQHKEQIAQWLL 238
           L+FSAT  G  +R +  +++K  +H +L +     A  T  Q++     + K ++   L+
Sbjct: 183 LMFSATFSGG-VRKLADEIMK--KHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSELI 239

Query: 239 ANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLV 298
             + + + ++F+ TR   +++   L    + + V+H EK Q  R+ A++ F +G  +VLV
Sbjct: 240 GRKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRVLV 299

Query: 299 ATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSI 358
           +T+VAARGLDI  L+ V+NFD+P   ++YVHRVGRTGRAG  G+AIS ++  +   ++ I
Sbjct: 300 STEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLADI 359

Query: 359 ERYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAK 410
           E+ + Q+ +R V+   + +       +   + + +KK +VE     + AA K
Sbjct: 360 EKLIGQRLKRIVMPGYEVSNRDLLLKQLQKRRSFAKKTRVESDAIAQVAAEK 411