Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 393 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  266 bits (681), Expect = 7e-76
 Identities = 152/390 (38%), Positives = 231/390 (59%), Gaps = 8/390 (2%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F+   L E L +AV  L +   TP+QA AIP  L GRD+   AQTG+GKTA+FVLPLL R
Sbjct: 4   FASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQR 63

Query: 62  LVDLSGPRV--EIRALILLPTRELAQQTLKQV-QLFSQFTYIKSGLVTGGEDFKEQAAML 118
           L     PRV    RALIL PTRELAQQ  + +  L    + I+ G+V GG D   Q  M+
Sbjct: 64  LTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQTRMV 123

Query: 119 RKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQ 178
           ++  ++L+ TPGRL + +N   +DL  ++VL+LDEADRMLDMGFA  ++++      + Q
Sbjct: 124 QRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKRQ 183

Query: 179 TLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLL 238
           T++FSAT     +  ++  ++ DP  + +   + +A    Q+++  +    ++ +   L 
Sbjct: 184 TVMFSATLPNE-VTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLDLLG 242

Query: 239 ANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLV 298
                ++AI+FT T+  A+++   L+   VK+ V+HG K Q  R+ A+  FK G  + LV
Sbjct: 243 DARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRALV 302

Query: 299 ATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSI 358
           ATD+AARG+D+DG+  VINFD+P   + YVHR+GRT RAG  G+A+SL    +   + +I
Sbjct: 303 ATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPYLKAI 362

Query: 359 ERYLKQQFERRVIKEVKGTYNGPKKVKASG 388
           E+ +K     R+  +    ++ P   +A G
Sbjct: 363 EKVIKS----RIDVDSTHAFHTPSMARAHG 388