Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 460 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  310 bits (793), Expect = 8e-89
 Identities = 179/442 (40%), Positives = 266/442 (60%), Gaps = 7/442 (1%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           FS F+L +RLL ++  +    PT +Q  +IP+ L GRDL  +++TGSGKT AF+LP + R
Sbjct: 16  FSDFSLDKRLLTSLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAMQR 75

Query: 62  LVDLSG-PRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK 120
           ++      + + R LILLPTRELA Q   Q++L    T  K+  + GGE+F +QA  L +
Sbjct: 76  VIATKALSKRDPRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAKALAR 135

Query: 121 VPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECEN-REQT 179
            P  ++ TPGRL + L   +L L+ +++LILDEADRMLD+GFAE +  + +  ++ R QT
Sbjct: 136 DPHFVVATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQLRAINQAADHKRRQT 195

Query: 180 LLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLA 239
           L+FSAT     + +I  ++LK+PEH+ + +     +   Q+I   D+  HKEQ+   LL 
Sbjct: 196 LMFSATLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLCDNLSHKEQLLTRLLQ 255

Query: 240 NETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVA 299
            E   + IIFT TR   DR+ G L  +      L GE  Q  R   +++F +G  ++LV 
Sbjct: 256 LEPHKQVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSRGQQQILVT 315

Query: 300 TDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIE 359
           TDVA+RGLD+  + LVINFDMP+  +EY+HR+GRTGRAG +G AISL+   DW     ++
Sbjct: 316 TDVASRGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNFKQVQ 375

Query: 360 RYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKAAAKRKPTAKPKA 419
            +L++ FE   ++E+   + G K   +  K  G ++ K + KT   KAA+  KPT KP+ 
Sbjct: 376 NFLRKSFEFSELEELAPKFKGLKDKPSQEKRLGKQQAKPKAKTA--KAASSTKPT-KPRD 432

Query: 420 NAPLASAD-GLAPLKKRKPAAE 440
              +   D G AP+  RKP A+
Sbjct: 433 KRFITGVDVGDAPM-LRKPKAK 453