Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  273 bits (697), Expect = 1e-77
 Identities = 158/431 (36%), Positives = 248/431 (57%), Gaps = 18/431 (4%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F  F+    +L A++E  + + TP+Q  AIP   +G+D+  +AQTG+GKTAAF LP+L +
Sbjct: 3   FESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LVDLSGP--RVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLR 119
           + D      R   RALIL PTREL  Q    ++ +S++  I    V GG     QAA ++
Sbjct: 63  MFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAKVK 122

Query: 120 KVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQT 179
           K  D+++ TPGRLLE L A NL+LS+V  L+LDEADRMLDMGF  D++++ ++     Q 
Sbjct: 123 KGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDRQN 182

Query: 180 LLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLA 239
           LLFSAT   +A++ +  ++L  P+ + ++  +  A  T  Q++     + K ++   L+ 
Sbjct: 183 LLFSATFS-SAVKQLANEMLVKPKLIAVDKQNTTAV-TVSQVVYPVEQRRKRELLSELIG 240

Query: 240 NETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVA 299
            + + + ++FT TR  AD +   L    + + V+H EK Q +R+ A+  FK+G  + LVA
Sbjct: 241 KKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVA 300

Query: 300 TDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIE 359
           T+VAARGLDI  L+ V+NFD+P   ++YVHR+GRTGRAG  G+AISL++  +   ++ IE
Sbjct: 301 TEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLADIE 360

Query: 360 RYLKQQFER------------RVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKA 407
           + +  +  R             +IK+++   +  KK + S       +   EK  G ++ 
Sbjct: 361 KLIGNKIRRITIPGYEVGSRDLLIKQLQKRRSFAKKQQRSDNVGA--QVIAEKNMGARRV 418

Query: 408 AAKRKPTAKPK 418
             K    AK K
Sbjct: 419 KVKNSSNAKIK 429