Pairwise Alignments

Query, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

Subject, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  271 bits (692), Expect = 4e-77
 Identities = 175/449 (38%), Positives = 238/449 (53%), Gaps = 42/449 (9%)

Query: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 61
           F+   L   LL+A+  L +  PTPVQ  AIP  L G DL   AQTG+GKTA+F LPLL R
Sbjct: 3   FADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLLQR 62

Query: 62  LVDLSGPRVE--IRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLR 119
           L     P      RALIL+PTRELAQQ       + QF  ++S  V GG     Q   LR
Sbjct: 63  LAHDPEPTASNSTRALILVPTRELAQQVCDSFVAYGQFLVLRSYAVYGGVSINPQMMKLR 122

Query: 120 KVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQT 179
           K  D+L+ TPGRLL+      +    V+ L+LDEADRMLD+GFA ++  L      + QT
Sbjct: 123 KGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFALLPKQRQT 182

Query: 180 LLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLA 239
           LLFSAT   A +R +  ++LK P  +     +  A G +Q ++  D  + K  +   L  
Sbjct: 183 LLFSATFSDA-IRSMADQLLKKPLSIETARPNATARGIKQWVVPVDK-KRKSALFCHLYK 240

Query: 240 NETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVA 299
           ++ +D+ ++F  TR   D +   L AK + A  +HG+K Q  R  A+E FK G  +VLVA
Sbjct: 241 HKKWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQVRVLVA 300

Query: 300 TDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIE 359
           TDVA+RGLDID L  V+NFD+P   ++YVHR+GRT RAG  G A+SL+  ++ NL+ +IE
Sbjct: 301 TDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNLLGAIE 360

Query: 360 RYLKQQFER-------------------RVIKEVK----------GTYNGPKKVKASGKA 390
             + Q   R                   +VIK+ K          G  +GP + K  G A
Sbjct: 361 VLIGQPLSRIEQHGFEPDHRVPETGPAGQVIKKPKKPKMPKHLDYGIGSGPSRGKGPGSA 420

Query: 391 AGSKKKKVEKKTGDKKAAAKRKPTAKPKA 419
                    K  G ++ A +    A PKA
Sbjct: 421 ---------KAPGGRRGAGRPGGKAAPKA 440