Pairwise Alignments

Query, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

Subject, 523 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

 Score =  341 bits (875), Expect = 3e-98
 Identities = 207/533 (38%), Positives = 296/533 (55%), Gaps = 28/533 (5%)

Query: 1   MRMNLPVTEHERTFPGDQRLISTTDLDSRITYCNDAFVAISGFTYDELVGQPHNLVRHPD 60
           M+ N PVT+ E+ F  D  L+STTDL  +I Y N  F  +S FT DEL  QPHN+VRHPD
Sbjct: 1   MKNNQPVTQKEKVFAADTILLSTTDLKGKIKYANAGFTQVSEFTQDELYRQPHNIVRHPD 60

Query: 61  MPPAVFGHMWETIKQGKPWMGIVKNRAKNGDYYWVSAYVTAIYEQGRISGYESVRSVPTR 120
           MPPA F  MW  +KQGKPW+GIVKNRAK+GD+YWV+AYV  ++E G++  Y+SVR   T+
Sbjct: 61  MPPAAFESMWSRLKQGKPWIGIVKNRAKSGDHYWVNAYVAPVFEGGQVHEYQSVRRKATQ 120

Query: 121 EQIRRAEALYARLRDGRSPVPW-AARLGHGLGHGWPLI---GAGLLSAAGYLWLPPYAAL 176
            QI  A+ALY  L  G+ P    AARLG G   G  L+   G G+ + AGY  L     L
Sbjct: 121 AQIDNAQALYGELNAGKRPRALKAARLGFGKRLGLVLLLSLGVGV-ALAGYSPL-----L 174

Query: 177 AVLMA--------SLLLAWYWVEHRQNQAIRRTLAEHPKAFTSPLVALTYSDNPGLKGQL 228
           A+L+A        SL+L  +     Q   I             PL    Y       G+L
Sbjct: 175 ALLLATGLGLGGLSLILKPFNALVEQASGI----------IDDPLATAVYCGRQDELGKL 224

Query: 229 DLAIISEEARLQTALTRLVDAGVGVKSRAAQSSDLSDAQAQMLDRQRSETDQSATAIAQM 288
             A+         A+ R+ D+   ++  +   ++         D Q  +T Q+ATA+ +M
Sbjct: 225 SFALQYLLTETGGAVGRMADSAESIQELSVSLNETISHTRDRADSQSQQTSQAATAVEEM 284

Query: 289 AATIQQVTHNVQSTAHAASDADQLAQQGSELALKSLKDMGSMSDAVNDIGQAVNALAEQT 348
           +A+  +V+ N+Q  A   S + + A++G EL ++ ++ +  +   V++    V ++ + +
Sbjct: 285 SASFNEVSQNIQHAAEEMSMSHEAAEKGHELLVEVIQAIKGLHQEVSNFSAVVASIEQDS 344

Query: 349 QSIGSVVDVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTRASTEEIH 408
           Q I  V++VI  IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR L+ RT  ST  I 
Sbjct: 345 QEINEVLEVIRGIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRQLSSRTSESTSHIE 404

Query: 409 HIIASLRAGAERAVSTASRGEQISRDSVHSVEAVQAALSGIAVAVSRITGMSQQMATASE 468
            I++  R    +A  T   G++ ++ SV   + V A+   +  ++ +I  MS   A A  
Sbjct: 405 AIVSKFRDSTLKASQTMQAGQRQAQHSVGLAQQVDASFEELRASIDKINQMSDANAAAMS 464

Query: 469 QQSHVAEDINQQIVRIAQLCDQSAGQARQGAEISQDLERMAEYLHSLAERFNR 521
           QQ+ VA +I+Q I  I +L   S  Q +  AE    +ER++   H L+++F R
Sbjct: 465 QQTAVASEISQSIQLINELALASLSQTQAAAERGGQVERLSAKTHHLSQQFWR 517