Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

 Score =  558 bits (1437), Expect = e-163
 Identities = 280/597 (46%), Positives = 402/597 (67%), Gaps = 13/597 (2%)

Query: 6   QRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVSP 65
           +RVL ++FGY  FR  Q  +IE    G D+LV+MPTGGGKSLC+Q+P L+  G+T+V+SP
Sbjct: 17  ERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISP 76

Query: 66  LIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRMLD 125
           LI+LM DQV  L   GV+A  +NSTL  E+   +  R+  G++K+LY++PER++    ++
Sbjct: 77  LISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIE 136

Query: 126 FLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTREEIV 185
            L  L +++ A+DEAHC+SQWGHDFRPEY  LGQL + FP+VP +ALTATAD  TR +I+
Sbjct: 137 RLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDIM 196

Query: 186 QRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKKVDETA 245
           QRL L    ++L SFDRPNI Y +V K  P  Q++ +L  +RG  GI+YC SRKKV+   
Sbjct: 197 QRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEMLT 256

Query: 246 AFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDL 305
             LC     A  YHAG+ A+ RA  Q  F  ++  I+VAT+AFGMGI+KPNVRFV H D+
Sbjct: 257 EKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 316

Query: 306 PKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLDAML 365
           P+++E+YYQETGRAGRDGLP++A M Y   DM  L++ML + + D   K++E HKL AM 
Sbjct: 317 PRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRML-DEKPDGAQKQVESHKLTAMG 375

Query: 366 ALCEETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTGQRYGV 425
           A  E   CRRQ LL YF E  ++PCG+CD C+D  + +DATE AR+ALS V+R  Q +G+
Sbjct: 376 AFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVNQNFGI 435

Query: 426 GHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLEGYGGL 485
           G++V+VL G    ++R  GH+K++ +G+G+  +   W S+FRQL+ +G++  ++     L
Sbjct: 436 GYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITRNSTL 495

Query: 486 RLSDSCRPLLRGEVTLQL---RRDLKPQTTAKTSSSSGGSPASQLVRAEERDLWEALRTL 542
           +L++  RPLLRGE+ ++L   R D   +  AK+   SG        +  ++ L+  LR L
Sbjct: 496 QLTEEARPLLRGEMNIELAVPRLDTAAR-AAKSDKLSG--------KNYDKKLFAKLRKL 546

Query: 543 RRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVL 599
           R+ +A++  +PPYV+F D+TL++M    P S  +M  V+GVG RKLE+Y   FL+++
Sbjct: 547 RKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLI 603