Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 487 a.a., ATP-dependent DNA helicase RecQ from Synechococcus elongatus PCC 7942

 Score =  228 bits (580), Expect = 7e-64
 Identities = 133/328 (40%), Positives = 192/328 (58%), Gaps = 12/328 (3%)

Query: 5   AQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVS 64
           AQ++L+  +GY +FR  QA I+E +A G D L++ PTGGGKSLCFQVP LLR GLT+VV+
Sbjct: 23  AQQLLQQHWGYPAFRPGQAEIVEAIAQGRDCLIIWPTGGGKSLCFQVPALLRSGLTIVVT 82

Query: 65  PLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRML 124
           PLIAL+++QVA L   G++AA L+S +    ++ +  +L   ++K+LYLAPE L+   + 
Sbjct: 83  PLIALIENQVADLQARGIAAACLHSQMAPRDRKAVLQKL--PQLKLLYLAPETLLSTPLW 140

Query: 125 DFLRDLDISL--FAIDEAHCVSQWGHDFRPEYLQLGQLAELF-----PHVPRIALTATAD 177
             L +  I++    +DEAHC+ QWG  FRP YL+LG +         P  P  A TATA 
Sbjct: 141 SRLTEPTIAIAGLILDEAHCLLQWGESFRPTYLRLGAIRPALVRLGKPSFPIAAFTATAY 200

Query: 178 MRTREEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRK---QLMAFLGERRGNAGIVY 234
            +    + Q L LQ  +R      R N+   +     PR+   QL+ FL + +G +G++Y
Sbjct: 201 PQEVARLSQILQLQQPQRHQRDPYRSNLVLAVKTVWTPRQRQNQLLDFLAKHQGQSGLIY 260

Query: 235 CLSRKKVDETAAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDK 294
             SR+  +  A  L ++G+    YHAG++   R   +  +        V + AFGMGIDK
Sbjct: 261 LRSRRDCETWADRLRNRGYRCAAYHAGVSDRERRQIEQAWQTGSLPFAVCSSAFGMGIDK 320

Query: 295 PNVRFVAHLDLPKSLEAYYQETGRAGRD 322
            +VR+VAH+  P  L  Y QE GR GRD
Sbjct: 321 RDVRWVAHVHPPLLLSEYLQEVGRGGRD 348