Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 607 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Shewanella amazonensis SB2B

 Score =  541 bits (1394), Expect = e-158
 Identities = 284/589 (48%), Positives = 391/589 (66%), Gaps = 7/589 (1%)

Query: 9   LKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVSPLIA 68
           L+ +FGY  FR  Q  ++  V  G D LV+MPTGGGKSLC+QVP L+ PG+T+VVSPLI+
Sbjct: 17  LQQVFGYRDFRPGQREVMTRVCQGEDCLVIMPTGGGKSLCYQVPALVLPGVTLVVSPLIS 76

Query: 69  LMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRMLDFLR 128
           LM DQV +L + GV+AA LNS+   EQ  E+  +LR GE+K+LY++PERL+Q   L  L 
Sbjct: 77  LMKDQVDSLIQSGVAAAYLNSSQPREQAIEVLRQLRFGELKLLYVSPERLLQGDFLSRLD 136

Query: 129 DLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTREEIVQRL 188
           +L ISLFA+DEAHC+S+WGHDFRPEY  LGQL + FPHVP +ALTATAD  TR  I +RL
Sbjct: 137 ELHISLFAVDEAHCISEWGHDFRPEYAALGQLKQRFPHVPVMALTATADEATRSSICERL 196

Query: 189 HLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKKVDETAAFL 248
            +Q  +  L+SFDRPNI Y +  K     QL  F+  ++G  GIVYC SR++VDE A  L
Sbjct: 197 GIQPFQH-LASFDRPNIRYTVAEKLNAANQLRQFIQSQKGANGIVYCSSRRRVDEVAERL 255

Query: 249 CSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKS 308
             QGF A  YHAG+  + RA+ Q RFL ++  ++VAT+AFGMGI+K NVRFV H D+PKS
Sbjct: 256 RQQGFYAEGYHAGMTQDERASVQDRFLKDQIDVVVATVAFGMGINKSNVRFVVHYDIPKS 315

Query: 309 LEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLDAMLALC 368
           +E+YYQETGRAGRDGL ++A + +   D+  ++ +++  E   + +++E HKL +M A  
Sbjct: 316 IESYYQETGRAGRDGLDAEALLLFDPADIGRVRHLIEQQEPGPQ-QQVEFHKLYSMAAFA 374

Query: 369 EETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTGQRYGVGHL 428
           E   CRRQ LL YF E   +PCG+CD C+D  + ++ TE A++ LS ++R  QR+GV HL
Sbjct: 375 EAQTCRRQVLLHYFGEAANEPCGNCDICIDPPKRYNGTEDAQKVLSCIYRLNQRFGVNHL 434

Query: 429 VDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLEGYGGLRLS 488
           ++VL G     V + GH+KLS +G+GK  +   W S+ RQL+  GL   D+     +RL+
Sbjct: 435 IEVLRGSKAASVVDRGHDKLSTWGIGKEKSTEYWLSVTRQLIHLGLASQDITRGSSVRLN 494

Query: 489 DSCRPLLRGEVTLQLRRDLKPQTTAKTSSSSGGSPASQLVRAEERDLWEALRTLRRKLAE 548
            + RP+L+GEV L L       +      +S  +P +      +R L+  L+ LRR +AE
Sbjct: 495 SAARPVLKGEVALMLAEPRLSLSDVPRKRTSSRTPQNY-----DRKLFARLKNLRRTIAE 549

Query: 549 EHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLE 597
           E  VPPY++F D+TL EM    P S +++  V+GVG RKL R+G  FL+
Sbjct: 550 EQDVPPYLVFNDATLAEMAWMLPKSEAELLAVNGVGERKLARFGGEFLD 598