Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 629 a.a., ATP-dependent DNA helicase RecQ (NCBI) from Rhodospirillum rubrum S1H

 Score =  574 bits (1480), Expect = e-168
 Identities = 291/600 (48%), Positives = 402/600 (67%), Gaps = 5/600 (0%)

Query: 3   EQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVV 62
           + A+ +L DI+G+  FR  Q AII  V  G D L +MPTG GKSLC+Q+P L+R G+T+V
Sbjct: 29  DPARVLLADIWGFKDFRPGQEAIIRAVLGGEDVLAVMPTGSGKSLCYQLPALMRQGVTLV 88

Query: 63  VSPLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPR 122
           VSPLIALM DQVA LD LGV+A ALNS++  +  R +   LR G +K+LY+APERL +P 
Sbjct: 89  VSPLIALMRDQVAQLDALGVAAGALNSSIDMDGYRRVMDGLRGGRLKLLYVAPERLARPD 148

Query: 123 MLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTRE 182
            L  LRD  ++  AIDEAHCVSQWGHDFRP+YL LG++ E    V  +A TATAD  TR+
Sbjct: 149 TLSLLRDSGVTALAIDEAHCVSQWGHDFRPDYLCLGKVREDLGGVQTVAFTATADAATRD 208

Query: 183 EIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKKVD 242
           +I  RL       F+  FDRPN+   + PK   R+++  F+    G +G++YC SR + +
Sbjct: 209 DIAGRLFPAPPRLFIGGFDRPNLRLAMRPKGDTRRRMFEFVAAHTGESGVIYCGSRARTE 268

Query: 243 ETAAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAH 302
           E A  L   G  ALPYHAGL    R ANQ  FL E+GL+MVAT+AFGMGIDKP+VRFV H
Sbjct: 269 ELAEGLRGAGHRALPYHAGLDKPVRDANQDAFLAEDGLVMVATVAFGMGIDKPDVRFVCH 328

Query: 303 LDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLD 362
            D+P+S+EAYYQE GRAGRDGL +D    YGL D+ + +  ++ S+  +  KR+E  +L+
Sbjct: 329 ADMPRSIEAYYQEIGRAGRDGLAADTLTFYGLDDVRLHRMRIEESQAGDEQKRVEIQRLN 388

Query: 363 AMLALCEETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFRTGQR 422
           A+LALCE  RCRRQ+LL YF E  E PCG+CD C++ ++++D T  A++A+SA+ RTGQR
Sbjct: 389 ALLALCEAPRCRRQTLLGYFGERTE-PCGNCDLCINGVESFDGTIEAQKAMSAMLRTGQR 447

Query: 423 YGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLEGY 482
           +   HL+++L+G  T+ +  +GH+KL  FGVGK      WRS+FRQ+ A GL+ +D+  +
Sbjct: 448 FATEHLINILVGTQTDAITQYGHDKLPTFGVGKDHTRNVWRSIFRQISAGGLISLDIANH 507

Query: 483 GGLRLSDSCRPLLRGEVTLQLRRDL---KPQTTAKTSSSSGGSPASQLVRAEERDLWEAL 539
           G   ++++ R +LRG+  + LR D+     +   K       +PA QL  A++R L++AL
Sbjct: 508 GRWLMTEAGRAVLRGQAGVALRSDVLEAAGRGERKDKERRASAPAVQL-EADDRALFDAL 566

Query: 540 RTLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVL 599
           R  R++LA   +VP YV+F D TL+E+   +P SL  M ++ G+G  KL RYG AFLEV+
Sbjct: 567 RAKRQELARAENVPAYVVFADRTLIELATKRPPSLDAMREIHGIGQSKLARYGAAFLEVI 626