Pairwise Alignments

Query, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

Subject, 630 a.a., recombinase RecQ from Pedobacter sp. GW460-11-11-14-LB5

 Score =  280 bits (717), Expect = 1e-79
 Identities = 153/343 (44%), Positives = 216/343 (62%), Gaps = 1/343 (0%)

Query: 5   AQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQVPGLLRPGLTVVVS 64
           A  +L+  +G+ +FR  Q  II  V  G D+L L+PTGGGKS+CFQVP L++ G+ +VVS
Sbjct: 3   AIEILQKYWGHQAFRPLQEDIISSVLEGNDSLALLPTGGGKSICFQVPALVKEGICIVVS 62

Query: 65  PLIALMDDQVATLDELGVSAAALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRML 124
           PLIALM DQV  L   G+ A A+ + +   +   L      G++K LYL+PERL+   + 
Sbjct: 63  PLIALMKDQVEHLKSKGIEAIAIYAGMGKREIDILLDNCIYGKIKFLYLSPERLLSDLVR 122

Query: 125 DFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTREEI 184
             +  ++++L A+DEAHC+SQWG+DFRP Y QL +L E+ P+VP +ALTATA    R++I
Sbjct: 123 VRISYMNVNLIAVDEAHCISQWGYDFRPPYQQLSKLREILPNVPVLALTATATAFVRKDI 182

Query: 185 VQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKKVDET 244
           V++L ++  + F+ SF R N+ Y +   E   K+L+      +G  G+VY  +R++  E 
Sbjct: 183 VEKLEMKDPKVFVKSFARDNLSYVVFGNEDKYKKLIDICKNVKG-TGLVYVRNRRETAEV 241

Query: 245 AAFLCSQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLD 304
           + F+      A  YHAGL  +TR   Q  + N +  IMVAT AFGMGIDK +VRFV HLD
Sbjct: 242 SNFINRNQIKADFYHAGLERDTRFLKQEEWKNNKTRIMVATNAFGMGIDKADVRFVVHLD 301

Query: 305 LPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNS 347
           LP+SLEAYYQE GRAGRD   S A +     D++ L+    +S
Sbjct: 302 LPESLEAYYQEAGRAGRDEKRSYAVLLANQSDVLGLESRYLDS 344



 Score = 36.2 bits (82), Expect = 5e-06
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 351 ERHKRIEQHKLDAMLALCEETRCRRQSLLAYFDEILEQPCGHCDNCVDNIQT 402
           E  K I   +++A++       CR   LL YFDE     CG CD C+   +T
Sbjct: 517 ELRKEILHKQINAVVGYASSNLCRSVQLLNYFDEHHATKCGVCDVCLAEKRT 568