Pairwise Alignments

Query, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

Subject, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

 Score =  294 bits (752), Expect = 2e-84
 Identities = 159/327 (48%), Positives = 213/327 (65%), Gaps = 9/327 (2%)

Query: 17  EKLQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHDAIA-VDGKLIKREEAA 75
           EKLQKVLAR G GSRR++EA I  GR+ VNG  A LG+R++  +A+  +DG ++  +   
Sbjct: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62

Query: 76  EATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDG 135
           E   RV+ Y KP+GE+CTR DPEGR TVFDRLP+ +  RWI++GRLD NT+GLLLFTTDG
Sbjct: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122

Query: 136 ELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPAKFTDIQKAPGGEGFNH 195
           ELANRLMHPS +++REY VRV G+V +E +  L  GV LEDG A+F D+  A GGEG NH
Sbjct: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYA-GGEGINH 181

Query: 196 WYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREMTQGEIDILAA 255
            ++ V+ EGRNREVRRLWESQG  VSRLKRVR+G +FL+  LP G W E+   +++ L  
Sbjct: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241

Query: 256 EVGLQPVALPAMKLKAKDKMERLQRKSTRPLGRGERVRNLRPAHEGAATGERPARQPREE 315
            V L+P     + + A D   R + ++     R +++R     HE   +   P R  +  
Sbjct: 242 LVELRPEKETVLNM-APDAATRKRERT-----RSQKIRRAVRRHEERISA-TPGRSGKAP 294

Query: 316 APRKPTRGSTVAERPSEMRKRPGKPDG 342
           A RKP   S+   + +  ++   KP G
Sbjct: 295 ARRKPGGESSTRNKVANQQQSSRKPRG 321