Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 499 a.a., Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  220 bits (560), Expect = 1e-61
 Identities = 127/328 (38%), Positives = 185/328 (56%), Gaps = 21/328 (6%)

Query: 210 SSRVMAAVVREARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQSPLMALNCAGLPE 269
           +S   + + R+ARR A LDA +L+ GETGTGKELLA+  H  SPR + P +A+N A +PE
Sbjct: 171 NSPAASEIKRQARRAAQLDATVLLRGETGTGKELLAQGIHNLSPRARGPFVAVNVAAIPE 230

Query: 270 SMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLFLDGVGEMSPRLQVKLLRFLQDGCF 329
           S+ E ELFG  PGAF GA  + ++G  E+  GGTLFLD +G++   LQ KLLR LQ+   
Sbjct: 231 SLVEAELFGTAPGAFTGADRKARIGKFEVANGGTLFLDEIGDLPLPLQAKLLRVLQEQEV 290

Query: 330 RRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRLNVLSLHIPPLRECMDGLEGL 389
             +GS++   L+VRVI AT +DL    A G+FR DLY+RLNVL+L +PPLRE    +  +
Sbjct: 291 EPLGSNQVKALNVRVIAATHIDLEAKVAAGQFRDDLYYRLNVLALRVPPLRERSSDIPAV 350

Query: 390 VQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNVRQLENVLFQAVSLCDGGVVKSEHI 449
           V+H LD  + + G     L+P A+  L    W GNVR+L N+L +A    DG  +++ H+
Sbjct: 351 VEHLLDDIANRSGQPPMELSPEALALLCAQPWRGNVRELGNLLERAQLSADGPQLQAAHL 410

Query: 450 -----------RLPDYGVRQPLGEFSLEG---------DLSQIVGRFEKAVLESLMGEFP 489
                        P Y    P      E           L+Q + + E+  L+S +    
Sbjct: 411 LPLLGEQARSADAPAYATSAPSAALPTEATPSEELPLQPLAQTIAQAERRALQSALAACK 470

Query: 490 SS-RALGKRLGVSHTTIANKLRDYSLNK 516
            + R     LG+S  ++ +KL+ + L++
Sbjct: 471 GNRRRAAMELGISRASLYSKLQQHGLSQ 498