Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

 Score =  379 bits (972), Expect = e-109
 Identities = 208/517 (40%), Positives = 317/517 (61%), Gaps = 6/517 (1%)

Query: 1   MRIKVHCQNRIGILRDILNLLVEYGINVLRGEVGGDHGNAIYLHCPNLINLQFQALRPKF 60
           MR++V C++R+G+ R++L++L    I++   E+  D    IYL+CP++    F  L  + 
Sbjct: 1   MRLEVLCEDRLGLTRELLDILASKSIDLRGIEI--DVIGIIYLNCPDIDFETFSELMAEI 58

Query: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALDFPVLSIDMGGSIVAANRAAAQLLGVRVD 120
             I GV  V+++  MP ER + EL +LL  L   VL+I++ G++  AN AAA L      
Sbjct: 59  RRIPGVKDVRKIQFMPIERHNTELISLLNNLPDAVLAINLKGAVDMANHAAAALFNREES 118

Query: 121 EVPGMPLARYVEDFDLPELVRANKSRINGLRIKVKGDVFLADIAPLQSEHDDSEA-LAGA 179
            + G  ++  +  F+    +  +KSR+    + + G  ++ +I P+    D  ++ LA A
Sbjct: 119 SMIGQQISALMPVFNFTRWLEGSKSRLRE-DVVLDGLDYVMEIMPVYISSDAKQSTLASA 177

Query: 180 VLTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGT 239
           ++ L  A+        +  Q   GF+     S    +++ +A+++A LD PLLIEGETGT
Sbjct: 178 MMMLRAANAGLTSTTQIPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGETGT 237

Query: 240 GKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELT 299
           GKE+LA+ACH  S R  +P + L+CA +P+ +AETELFG+ PG+F     +G  G+ E  
Sbjct: 238 GKEMLAKACHNRSDRSSAPFLVLSCASMPDDVAETELFGHAPGSFN--HQQGHKGIFEQA 295

Query: 300 AGGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARG 359
            GGT+FLD +GEMSP LQ+KLLRFLQDG FRRVG + E+++DVRVI +T+ +L++L    
Sbjct: 296 NGGTVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAESR 355

Query: 360 EFRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQY 419
            FR+DL++RLNVL+L IPPLRE    ++ L++ F+ +   ++G   P+L    +DKL QY
Sbjct: 356 RFREDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLSQY 415

Query: 420 HWPGNVRQLENVLFQAVSLCDGGVVKSEHIRLPDYGVRQPLGEFSLEGDLSQIVGRFEKA 479
            WPGN+RQL+N++ +A++  +G V+  E   LP           +L+G L  I+  +E  
Sbjct: 416 QWPGNMRQLDNMVLRALTEIEGDVLGIEPFHLPQVDSVSSAPSINLDGSLDDIMKEYESQ 475

Query: 480 VLESLMGEFPSSRALGKRLGVSHTTIANKLRDYSLNK 516
           VL+ L   FPSSR L KRL VSHT+IANKLRDY + K
Sbjct: 476 VLDRLFQSFPSSRKLAKRLNVSHTSIANKLRDYGIRK 512