Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  201 bits (510), Expect = 6e-56
 Identities = 112/261 (42%), Positives = 154/261 (59%), Gaps = 1/261 (0%)

Query: 181 LTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGTG 240
           +T++ A R   ++ N    + + +     SS+ M AV R     A   A + I GE+GTG
Sbjct: 106 VTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTG 165

Query: 241 KELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTA 300
           KE+ A A H AS RG  P +A+NCA +P+ + E+ELFG+  GAF GA  E + G  E   
Sbjct: 166 KEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATE-RQGAAEAAD 224

Query: 301 GGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGE 360
           GGTLFLD + EM   LQ KLLRF+Q G F++VGS +   +DVR +CAT  D  +    G 
Sbjct: 225 GGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGR 284

Query: 361 FRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYH 420
           FR+DLY+RL V+ LH+PPLR   D +  +    L   S++ G    RL+   +++  QY 
Sbjct: 285 FREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYE 344

Query: 421 WPGNVRQLENVLFQAVSLCDG 441
           WPGNVRQL+NVL   V L +G
Sbjct: 345 WPGNVRQLQNVLRNVVVLNEG 365