Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 481 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  215 bits (547), Expect = 3e-60
 Identities = 132/336 (39%), Positives = 196/336 (58%), Gaps = 8/336 (2%)

Query: 187 DRIGERIYNVRKQELRGFDSIFQSS-RVMAAVVREARRMAPLDAPLLIEGETGTGKELLA 245
           DR GER +    ++ +GFDS+  ++   +A  +  AR++A  D  +L+ GE+GTGKELLA
Sbjct: 143 DRAGERRHRAAGRD-QGFDSLLHAAGSPLAVAIALARKVARFDISVLLTGESGTGKELLA 201

Query: 246 RACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLF 305
           RA H  SPR     +  NC  LP+ + E+ELFG   GA+ GA  E ++GL EL  GGT+F
Sbjct: 202 RAIHRGSPRAARRFVVENCGALPDQLLESELFGCKKGAYTGAH-EDRVGLFELADGGTIF 260

Query: 306 LDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDL 365
           LD +GE SP  QVKLLR LQ+G  R +GS     +DVRVI AT  DL    A+G FR+DL
Sbjct: 261 LDEIGETSPAFQVKLLRVLQEGEIRPLGSSLTRKVDVRVIAATNRDLESEVAKGRFRRDL 320

Query: 366 YHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNV 425
           ++RL    LH+P LRE    +  L + F+ ++ R +G  +  L+  A+ +L ++ WPGNV
Sbjct: 321 FYRLAGFPLHLPALRERPMDVPLLAEAFMGESMRFLGKPVEGLSDGALTRLRRHDWPGNV 380

Query: 426 RQLENVLFQAVSLCDGGVVKSEHIRLPDYGVRQPL---GEFSLEGDLSQIVGRFEKAVL- 481
           R+L+N + + ++L DG ++ +E +  P  G  +     G  +  G L + V   E AV+ 
Sbjct: 381 RELQNEIQRMIALADGPLL-TEDLASPKVGAARAEALGGGVAASGPLKERVEALEAAVIA 439

Query: 482 ESLMGEFPSSRALGKRLGVSHTTIANKLRDYSLNKS 517
           E L     +   L   LG+S   +  K+R Y L+++
Sbjct: 440 EGLARPGCTLSRLAADLGLSRVGLRAKMRRYGLDQA 475