Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  215 bits (547), Expect = 3e-60
 Identities = 148/404 (36%), Positives = 215/404 (53%), Gaps = 19/404 (4%)

Query: 118 RVDEVPGMPLARYV--EDFDLPELVRANKSRINGL--RIKVKGDVFLADIAPLQSEHDDS 173
           ++ ++ GM L  YV  E  D+  ++      I      ++   D +LA     QS     
Sbjct: 58  KLGQLTGMDLLNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAI 117

Query: 174 EALAGAVLTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLI 233
           E +A ++    +  R+   +   ++QEL G   +   S +M  V +  +R++  DA +LI
Sbjct: 118 EKVAKSIALKRQNRRLSSELS--QQQELVG---LVGRSALMQKVYQRVQRVSATDATVLI 172

Query: 234 EGETGTGKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKL 293
            GE+GTGKEL ARA +  S R   P +A+NC  +PES+AE ELFG   GA+ GA  + K+
Sbjct: 173 GGESGTGKELAARALYQLSARSHKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQ-KI 231

Query: 294 GLLELTAGGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLS 353
           G LE   GGT+FLD +GE+    Q KLLRFLQ+G   R+G + E+ LDVRVI AT  DL 
Sbjct: 232 GKLEAADGGTVFLDEIGELPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQ 291

Query: 354 ELCARGEFRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAM 413
           +  A G FR+DLY+RLNV+ +H+P LRE  + +  LV+HFL   + Q G  +P+L+   +
Sbjct: 292 QEVAEGRFREDLYYRLNVVPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTL 351

Query: 414 DKLGQYHWPGNVRQLENVLFQAVSLCDGGVVKSEHIRLPD--YGVRQPLGEFSLEGDLSQ 471
             L  + WPGNVR+L N + + V L D   +  E    P      R  L E  +E +   
Sbjct: 352 KSLLDHSWPGNVRELANRIERFVLLGDEEEMVQELGAAPQPLDTKRFVLPEAGIEWE--- 408

Query: 472 IVGRFEKAVLESLMGEFPSSRA-LGKRLGVSHTTIANKLRDYSL 514
               FEK  L   +  F  +R    K LG+S+     +L  Y L
Sbjct: 409 ---SFEKDCLRQALDRFEGNRTKAAKCLGLSYKAFLYRLEKYQL 449