Pairwise Alignments

Query, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 627 a.a., sigma-54-dependent Fis family transcriptional regulator from Klebsiella michiganensis M5al

 Score =  211 bits (538), Expect = 5e-59
 Identities = 136/385 (35%), Positives = 206/385 (53%), Gaps = 20/385 (5%)

Query: 145 SRINGLRIKVKGDVFLADIAPLQSEHDDSEALAGAVLT-LHRADRIGERIYNVRKQELRG 203
           S IN L IK +          +   H  +  ++ AV+T L +   + +   N +K +LRG
Sbjct: 248 SIINELDIKEQAIDINGVTIHISVRHFSNRKISYAVITGLSQESTLWQNSVN-KKSKLRG 306

Query: 204 F------DSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQS 257
           F      D I   S  +  V+++A+  A  + P+ I G+TGTGKEL A++ H  S R  S
Sbjct: 307 FSTTWSFDDIIGQSPAILDVIKKAKLCARHELPIHILGDTGTGKELFAQSIHNHSARSHS 366

Query: 258 PLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELTAGGTLFLDGVGEMSPRLQ 317
           P +A+NCA +PE + E+ELFGY  GAF  AR  GK G+ E+   GT+F+D + E    +Q
Sbjct: 367 PFIAINCAAIPEGILESELFGYADGAFTSARKGGKPGVFEMAMNGTVFIDEISEAPLSVQ 426

Query: 318 VKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRLNVLSLHIP 377
           VKLLR LQ+  F R+G D  +  D R+I A+  DL  L A GEFRQDLY+R+N+L L +P
Sbjct: 427 VKLLRVLQEKQFSRLGGDTLITADFRLITASNKDLRPLVASGEFRQDLYYRINILELSLP 486

Query: 378 PLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQYHWPGNVRQLENVLFQAVS 437
            L +    +  L+QH L Q  +QI        P A+D L  Y WPGN+R+L+ V+++ + 
Sbjct: 487 ALCQRPGDIMPLIQHLLHQQGKQI-----TFTPDAVDFLHGYRWPGNIRELQAVIYRLIV 541

Query: 438 LCDGGVVKSE------HIRLPDYGVRQPLGEFSLEGDLSQIVGRFEKAVLESLMGEFPSS 491
           L D   V  E       I   D      L    +  D + ++ + EK ++  ++ +    
Sbjct: 542 LVDIDRVSKEILLQVSQISPDDDNEGSHLPATGVTSDETDLLKKQEKRLITHVIEKTDGD 601

Query: 492 RALGK-RLGVSHTTIANKLRDYSLN 515
           R      LG+S TT+  KL+ ++++
Sbjct: 602 RTKASVMLGISPTTLWRKLKQHNIS 626