Pairwise Alignments

Query, 450 a.a., putative Porin from Pseudomonas putida KT2440

Subject, 439 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  176 bits (447), Expect = 1e-48
 Identities = 128/468 (27%), Positives = 211/468 (45%), Gaps = 54/468 (11%)

Query: 2   AVVTKVKRILAALACGTLAQQGYAVGFLDDSKASISSRTLYYDGDQR----STGGADQRQ 57
           AV +     LA  +    AQ   A GF++ S  S+ +R  Y++ D R    + G     +
Sbjct: 5   AVFSLTALSLALGSAPVFAQSETAEGFIEGSTLSLINRNFYFNRDFRDGESAAGNGYSEE 64

Query: 58  TLTGLRLDFQSGYTEGVVGLGLDLQALAGFTLSGGTSPHNASTVNTVSPVTTDGSPVDNW 117
              GL   F+SGYT+G VG+G D  A+ G  L  G+          + P  + G P D++
Sbjct: 65  WAHGLMAFFESGYTQGSVGIGFDAFAMLGLKLDSGSGRSGVGGSIDLLPHDSAGDPEDDF 124

Query: 118 SRIGGNARFKYSKTELKAGNALTFNLPVLISNDGRLLPASFQGAALTSNEFENLTLNGGF 177
           +R+GG  + +   TE+KAG+      PV+   D RLLP SF+G  + +N  ++LTL GG 
Sbjct: 125 TRVGGAVKARLLDTEIKAGDVFP-TTPVVHFGDSRLLPESFKGVTVVNNSLDDLTLQGGR 183

Query: 178 LNRAIGRASSN----WAGISGGGAKGSDGFAFAGGDWNVRKNLKLQYYYANLEDYYSQNF 233
           L+      +SN    +    GGG   +    +AGGD++V +N+ L  Y + L+D ++Q++
Sbjct: 184 LHAMSQPNTSNMNEDFVTFYGGGV-DAPWLGYAGGDYSVNENISLSLYTSRLKDAWNQHY 242

Query: 234 LGLIHSFDMGVGQSLTTDLRYFKSDSDGKNGTDSRYALRNGYNENGKIDNTTWSLAFTYK 293
            G   ++ +    +L     Y+K+  +G+                G+ +N  WS +    
Sbjct: 243 FGASATYPLSDIVALLASFNYYKATDEGRELL-------------GEFNNNIWSSSLGVA 289

Query: 294 AGGHALTLGHQQVSDKSGFATVNSSNVVDGRGRPEGEGGVQSLYLYTDVMVNSFTRAGEN 353
            G H +T  +Q+ +  + F  +  ++               S+YL   +  + F    E 
Sbjct: 290 FGAHTVTASYQRNNGNNDFDYLRQAD---------------SIYLNNSIQYSDFNSPKEQ 334

Query: 354 STFGLYSYDFAALGVPGL------KAGW--TYVSGKDI----RGTGNTTTGRYNEWESDY 401
           S    Y  + A  G+PGL        GW   Y +  ++       G   TG+ N WE D 
Sbjct: 335 SWMLRYDLNMAEYGIPGLTFMTRYARGWGADYSNANEVYMRQDDNGAPLTGQ-NRWERDV 393

Query: 402 RLDYVLQSGTFKGLGFTLRKGVFRTGLPDSTLKDQDQVRFFVNYTYAL 449
              YV+Q+G+ K L   +R+   R    +S   D D+VRF   Y  ++
Sbjct: 394 EARYVVQTGSLKDLSLRVRQATTRATAFES---DLDEVRFIAEYPLSI 438